IRanges
This is the development version of IRanges; for the stable release version, see IRanges.
Foundation of integer range manipulation in Bioconductor
Bioconductor version: Development (3.23)
Provides efficient low-level and highly reusable S4 classes for storing, manipulating and aggregating over annotated ranges of integers. Implements an algebra of range operations, including efficient algorithms for finding overlaps and nearest neighbors. Defines efficient list-like classes for storing, transforming and aggregating large grouped data, i.e., collections of atomic vectors and DataFrames.
Author: Hervé Pagès [aut, cre], Patrick Aboyoun [aut], Michael Lawrence [aut]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("IRanges")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("IRanges")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 2.45.0 |
| In Bioconductor since | BioC 2.3 (R-2.8) (17 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0), methods, utils, stats, BiocGenerics(>= 0.53.2), S4Vectors(>= 0.47.6) |
| Imports | stats4 |
| System Requirements | |
| URL | https://bioconductor.org/packages/IRanges |
| Bug Reports | https://github.com/Bioconductor/IRanges/issues |
See More
| Suggests | XVector, GenomicRanges, Rsamtools, GenomicAlignments, GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset, RUnit, BiocStyle |
| Linking To | S4Vectors |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/IRanges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IRanges |
| Package Short Url | https://bioconductor.org/packages/IRanges/ |
| Package Downloads Report | Download Stats |