SingleCellExperiment
This is the development version of SingleCellExperiment; for the stable release version, see SingleCellExperiment.
S4 Classes for Single Cell Data
Bioconductor version: Development (3.20)
Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.
Author: Aaron Lun [aut, cph], Davide Risso [aut, cre, cph], Keegan Korthauer [ctb], Kevin Rue-Albrecht [ctb], Luke Zappia [ctb] (
Maintainer: Davide Risso <risso.davide at gmail.com>
citation("SingleCellExperiment")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SingleCellExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SingleCellExperiment")
1. An introduction to the SingleCellExperiment class | HTML | R Script |
2. Applying over a SingleCellExperiment object | HTML | R Script |
3. Developing around the SingleCellExperiment class | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software |
Version | 1.27.2 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | GPL-3 |
Depends | SummarizedExperiment |
Imports | methods, utils, stats, S4Vectors, BiocGenerics, GenomicRanges, DelayedArray |
System Requirements | |
URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SingleCellExperiment_1.27.2.tar.gz |
Windows Binary (x86_64) | SingleCellExperiment_1.27.2.zip |
macOS Binary (x86_64) | SingleCellExperiment_1.27.2.tgz |
macOS Binary (arm64) | SingleCellExperiment_1.27.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SingleCellExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SingleCellExperiment |
Bioc Package Browser | https://code.bioconductor.org/browse/SingleCellExperiment/ |
Package Short Url | https://bioconductor.org/packages/SingleCellExperiment/ |
Package Downloads Report | Download Stats |