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DuoClustering2018

This is the development version of DuoClustering2018; for the stable release version, see DuoClustering2018.

Data, Clustering Results and Visualization Functions From Duò et al (2018)


Bioconductor version: Development (3.20)

Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.

Author: Angelo Duò, Charlotte Soneson

Maintainer: Angelo Duò <angelo.duo at icloud.com>

Citation (from within R, enter citation("DuoClustering2018")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DuoClustering2018")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DuoClustering2018")
Apply clustering method HTML R Script
Plot performance summaries HTML R Script
Visualize data sets and clustering results with iSEE HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, SingleCellData
Version 1.23.0
License GPL (>=2)
Depends
Imports ExperimentHub, utils, magrittr, dplyr, tidyr, mclust, ggplot2, purrr, reshape2, viridis, ggthemes, stats, methods
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me corral, scry
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DuoClustering2018_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DuoClustering2018
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DuoClustering2018
Package Short Url https://bioconductor.org/packages/DuoClustering2018/
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