Registration Open for Bioc2024
Early registration discount pricing ends May 31!

TENxPBMCData

This is the development version of TENxPBMCData; for the stable release version, see TENxPBMCData.

PBMC data from 10X Genomics


Bioconductor version: Development (3.20)

Single-cell RNA-seq data for on PBMC cells, generated by 10X Genomics.

Author: Kasper D. Hansen [aut], Davide Risso [aut], Milan Malfait [ctb], Jeroen Gilis [ctb], Theodore Killian [ctb], Murat Cem Kose [ctb], Chong Tang [ctb], Teun van den Brand [ctb], Dania Machlab [ctb], Stephanie Hicks [aut, cre]

Maintainer: Stephanie Hicks <shicks19 at jhu.edu>

Citation (from within R, enter citation("TENxPBMCData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TENxPBMCData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxPBMCData")
Obtaining scRNA-seq data on PBMCs from 10X Genomics HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version 1.23.0
License CC BY 4.0
Depends SingleCellExperiment, HDF5Array
Imports AnnotationHub, ExperimentHub
System Requirements
URL
See More
Suggests rmarkdown, knitr, BiocStyle, snow, BiocFileCache, BiocParallel
Linking To
Enhances
Depends On Me OSCA.multisample, SingleRBook
Imports Me singleCellTK
Suggests Me adverSCarial, ASURAT, celda, concordexR, decontX, ExperimentSubset, glmGamPoi, iSEE, mbkmeans, schex, scone, scry, sketchR, transformGamPoi
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxPBMCData_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/TENxPBMCData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxPBMCData
Package Short Url https://bioconductor.org/packages/TENxPBMCData/
Package Downloads Report Download Stats