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This is the development version of cellxgenedp; for the stable release version, see cellxgenedp.

Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal

Bioconductor version: Development (3.20)

The cellxgene data portal ( provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at>

Citation (from within R, enter citation("cellxgenedp")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Case studies HTML R Script
Discovery and retrieval HTML R Script
Reference Manual PDF


biocViews DataImport, SingleCell, Software, ThirdPartyClient
Version 1.9.0
In Bioconductor since BioC 3.15 (R-4.2) (2 years)
License Artistic-2.0
Depends dplyr
Imports httr, curl, utils, tools, shiny, DT, rjsoncons
System Requirements
Bug Reports
See More
Suggests zellkonverter, SingleCellExperiment, HDF5Array, tidyr, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
Linking To
Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellxgenedp_1.9.0.tar.gz
Windows Binary
macOS Binary (x86_64) cellxgenedp_1.9.0.tgz
macOS Binary (arm64) cellxgenedp_1.9.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats