graph
This is the development version of graph; for the stable release version, see graph.
graph: A package to handle graph data structures
Bioconductor version: Development (3.24)
A package that implements some simple graph handling capabilities.
Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("graph")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("graph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graph")| Attributes for Graph Objects | HTML | R Script |
| clusterGraph and distGraph | HTML | R Script |
| Graph Design | HTML | R Script |
| graphBAM and MultiGraph Classes | HTML | R Script |
| How to use the graph package | HTML | R Script |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Software |
| Version | 1.91.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 21 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, BiocGenerics(>= 0.13.11) |
| Imports | stats, stats4, utils |
| System Requirements | |
| URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | graph_1.91.0.tar.gz |
| Windows Binary (x86_64) | graph_1.91.0.zip |
| macOS Binary (big-sur-x86_64) | graph_1.91.0.tgz |
| macOS Binary (sonoma-arm64) | graph_1.91.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/graph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/graph |
| Bioc Package Browser | https://code.bioconductor.org/browse/graph/ |
| Package Short Url | https://bioconductor.org/packages/graph/ |
| Package Downloads Report | Download Stats |