affy
This is the development version of affy; for the stable release version, see affy.
Methods for Affymetrix Oligonucleotide Arrays
Bioconductor version: Development (3.23)
The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.
Author: Rafael A. Irizarry <rafa at ds.dfci.harvard.edu>, Laurent Gautier <lgautier at gmail.com>, Benjamin Milo Bolstad <bmb at bmbolstad.com>, and Crispin Miller <cmiller at picr.man.ac.uk> with contributions from Magnus Astrand <Magnus.Astrand at astrazeneca.com>, Leslie M. Cope <cope at mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad Halling <challing at agilixcorp.com>, Wolfgang Huber, James MacDonald <jmacdon at u.washington.edu>, Benjamin I. P. Rubinstein, Christopher Workman <workman at cbs.dtu.dk>, John Zhang
Maintainer: Robert D. Shear <rshear at ds.dfci.harvard.edu>
citation("affy")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("affy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.89.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 20.5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 2.8.0), BiocGenerics(>= 0.1.12), Biobase(>= 2.5.5) |
| Imports | affyio(>= 1.13.3), BiocManager, graphics, grDevices, methods, preprocessCore, stats, utils |
| System Requirements | |
| URL | https://bioconductor.org/packages/affy |
| Bug Reports | https://github.com/rafalab/affy/issues |
See More
| Suggests | tkWidgets(>= 1.19.0), affydata, widgetTools, hgu95av2cdf |
| Linking To | preprocessCore |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/affy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affy |
| Package Short Url | https://bioconductor.org/packages/affy/ |
| Package Downloads Report | Download Stats |