MultiAssayExperiment
This is the development version of MultiAssayExperiment; for the stable release version, see MultiAssayExperiment.
Software for the integration of multi-omics experiments in Bioconductor
Bioconductor version: Development (3.23)
Harmonize data management of multiple experimental assays performed on an overlapping set of specimens. It provides a familiar Bioconductor user experience by extending concepts from SummarizedExperiment, supporting an open-ended mix of standard data classes for individual assays, and allowing subsetting by genomic ranges or rownames. Facilities are provided for reshaping data into wide and long formats for adaptability to graphing and downstream analysis.
Author: Marcel Ramos [aut, cre]
, Martin Morgan [aut, ctb], Lori Shepherd [ctb], Hervé Pagès [ctb], Vincent J Carey [aut, ctb], Levi Waldron [aut], MultiAssay SIG [ctb]
Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>
citation("MultiAssayExperiment")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MultiAssayExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| Video | |
| Video |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.37.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| License | Artistic-2.0 |
| Depends | SummarizedExperiment, R (>= 4.5.0) |
| Imports | Biobase, BiocBaseUtils, BiocGenerics, DelayedArray, GenomicRanges, IRanges, MatrixGenerics, methods, S4Vectors, tidyr, utils |
| System Requirements | |
| URL | http://waldronlab.io/MultiAssayExperiment/ |
| Bug Reports | https://github.com/waldronlab/MultiAssayExperiment/issues |
See More
| Suggests | BiocStyle, HDF5Array, h5mread, knitr, maftools, RaggedExperiment, reshape2, rmarkdown, survival, survminer, testthat, UpSetR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MultiAssayExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MultiAssayExperiment |
| Package Short Url | https://bioconductor.org/packages/MultiAssayExperiment/ |
| Package Downloads Report | Download Stats |