ExperimentHub
This is the released version of ExperimentHub; for the devel version, see ExperimentHub.
Client to access ExperimentHub resources
Bioconductor version: Release (3.23)
This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.
Author: Bioconductor Package Maintainer [cre], Martin Morgan [aut], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Valerie Oberchain [ctb], Kayla Morrell [ctb], Lori Shepherd [aut]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("ExperimentHub")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExperimentHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentHub")| ExperimentHub: Access the ExperimentHub Web Service | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
| Version | 3.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (10 years) |
| License | Artistic-2.0 |
| Depends | methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 3.99.3), BiocFileCache(>= 2.99.3) |
| Imports | utils, S4Vectors, BiocManager, rappdirs |
| System Requirements | |
| URL | https://github.com/Bioconductor/ExperimentHub |
| Bug Reports | https://github.com/Bioconductor/ExperimentHub/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ExperimentHub_3.2.0.tar.gz |
| Windows Binary (x86_64) | ExperimentHub_3.2.0.zip |
| macOS Binary (big-sur-x86_64) | ExperimentHub_3.2.1.tgz |
| macOS Binary (sonoma-arm64) | ExperimentHub_3.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ExperimentHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentHub |
| Bioc Package Browser | https://code.bioconductor.org/browse/ExperimentHub/ |
| Package Short Url | https://bioconductor.org/packages/ExperimentHub/ |
| Package Downloads Report | Download Stats |