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plot bayesian network inferred from gene expression data based on enrichment analysis results

Bioconductor version: Release (3.19)

This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.

Author: Noriaki Sato [cre, aut]

Maintainer: Noriaki Sato <nori at>

Citation (from within R, enter citation("CBNplot")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

CBNplot HTML R Script
Reference Manual PDF


biocViews Bayesian, GeneExpression, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, Pathways, Reactome, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License Artistic-2.0
Depends R (>= 4.3.0)
Imports ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork,, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang, oaqc
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Suggests knitr, arules, concaveman, ReactomePA, bnviewer, DESeq2, GEOquery, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)
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Follow Installation instructions to use this package in your R session.

Source Package CBNplot_1.4.0.tar.gz
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macOS Binary (x86_64) CBNplot_1.4.0.tgz
macOS Binary (arm64) CBNplot_1.4.0.tgz
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