Registration Open for Bioc2024 July 24-26


Analyze Transcription Factor Enrichment

Bioconductor version: Release (3.19)

Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.

Author: Laura Puente SantamarĂ­a, Luis del Peso

Maintainer: Laura Puente SantamarĂ­a <lpsantamaria at>

Citation (from within R, enter citation("TFEA.ChIP")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

TFEA.ChIP: a tool kit for transcription factor enrichment HTML R Script
Reference Manual PDF


biocViews ChIPSeq, GeneRegulation, GeneSetEnrichment, ImmunoOncology, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports GenomicRanges, IRanges, biomaRt, GenomicFeatures, grDevices, dplyr, stats, utils, R.utils, methods,
System Requirements
See More
Suggests knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2, DESeq2, BiocGenerics, ggrepel, rcompanion, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TFEA.ChIP_1.24.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) TFEA.ChIP_1.24.0.tgz
macOS Binary (arm64) TFEA.ChIP_1.24.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats
Old Source Packages for BioC 3.19 Source Archive