GenomicFiles
This is the released version of GenomicFiles; for the devel version, see GenomicFiles.
Distributed computing by file or by range
Bioconductor version: Release (3.22)
This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
Author: Bioconductor Package Maintainer [aut, cre], Valerie Obenchain [aut], Michael Love [aut], Lori Shepherd [aut], Martin Morgan [aut], Sonali Kumari [ctb] (Converted 'GenomicFiles' vignettes from Sweave to RMarkdown / HTML.)
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GenomicFiles")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicFiles")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicFiles")| Introduction to GenomicFiles | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| Video |
Details
| biocViews | Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (11.5 years) |
| License | Artistic-2.0 |
| Depends | BiocGenerics, BiocParallel, GenomicRanges, MatrixGenerics, methods, Rsamtools(>= 2.25.1), rtracklayer(>= 1.69.1), SummarizedExperiment(>= 1.39.1) |
| Imports | BiocBaseUtils, GenomeInfoDb(>= 1.45.7), GenomicAlignments(>= 1.45.1), IRanges, S4Vectors, Seqinfo, VariantAnnotation(>= 1.55.1) |
| System Requirements | |
| URL | https://github.com/Bioconductor/GenomicFiles |
| Bug Reports | https://github.com/Bioconductor/GenomicFiles/issues |
See More
| Suggests | BiocStyle, Biostrings, deepSNV, genefilter, Homo.sapiens, knitr, RNAseqData.HNRNPC.bam.chr14, RUnit, snpStats |
| Linking To | |
| Enhances | |
| Depends On Me | IntEREst |
| Imports Me | CAGEfightR, derfinder, gDNAx, QuasR, Rqc, TFutils, VCFArray |
| Suggests Me | ldblock, MungeSumstats |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GenomicFiles_1.46.0.tar.gz |
| Windows Binary (x86_64) | GenomicFiles_1.45.2.zip |
| macOS Binary (x86_64) | GenomicFiles_1.46.0.tgz |
| macOS Binary (arm64) | GenomicFiles_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicFiles |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicFiles |
| Bioc Package Browser | https://code.bioconductor.org/browse/GenomicFiles/ |
| Package Short Url | https://bioconductor.org/packages/GenomicFiles/ |
| Package Downloads Report | Download Stats |