Registration Open for Bioc2024 July 24-26


Intron-Exon Retention Estimator

Bioconductor version: Release (3.19)

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

Author: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Dario Greco <dario.greco at>, Mikko Frilander <Mikko.Frilander at>

Maintainer: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Mikko Frilander <Mikko.Frilander at>

Citation (from within R, enter citation("IntEREst")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

IntEREst, Intron Exon Retention Estimator HTML R Script
Reference Manual PDF


biocViews Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, ImmunoOncology, Normalization, RNASeq, Sequencing, Software
Version 1.28.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-2
Depends R (>= 3.5.0), GenomicRanges, Rsamtools, SummarizedExperiment, edgeR, S4Vectors, GenomicFiles
Imports seqLogo, Biostrings, GenomicFeatures, txdbmaker, IRanges, seqinr, graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL, GenomicAlignments, BiocParallel, BiocGenerics, DEXSeq, DESeq2
System Requirements
See More
Suggests clinfun, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IntEREst_1.28.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) IntEREst_1.28.0.tgz
macOS Binary (arm64) IntEREst_1.28.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats