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Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (3.19)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version 0.42.0
License LGPL
System Requirements
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Suggests GenomicAlignments, BiocManager
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Depends On Me sequencing
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Suggests Me BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, roar, Rsamtools, SplicingGraphs
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Source Package RNAseqData.HNRNPC.bam.chr14_0.42.0.tar.gz
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