gDRtestData
This is the development version of gDRtestData; for the stable release version, see gDRtestData.
gDRtestData - R data package with testing dose response data
Bioconductor version: Development (3.24)
R package with internal dose-response test data. Package provides functions to generate input testing data that can be used as the input for gDR pipeline. It also contains qs2 files with MAE data processed by gDR.
Author: Aleksander Chlebowski [aut], Bartosz Czech [aut]
, Arkadiusz Gladki [cre, aut]
, Marc Hafner [aut]
, Marcin Kamianowski [aut], Sergiu Mocanu [aut], Natalia Potocka [aut], Dariusz Scigocki [aut], Janina Smola [aut], Allison Voung [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("gDRtestData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("gDRtestData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRtestData")| DepMap Portal Data | HTML | R Script |
| gDRtestData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, TechnologyData |
| Version | 1.11.7 |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | checkmate, data.table |
| System Requirements | |
| URL | https://github.com/gdrplatform/gDRtestData https://gdrplatform.github.io/gDRtestData/ |
| Bug Reports | https://github.com/gdrplatform/gDRtestData/issues |
See More
| Suggests | BiocStyle, gDRstyle(>= 1.7.1), knitr, qs2, reshape2, rmarkdown, SummarizedExperiment, testthat, yaml |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gDR, gDRcore, gDRimport, gDRutils |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gDRtestData_1.11.7.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/gDRtestData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDRtestData |
| Package Short Url | https://bioconductor.org/packages/gDRtestData/ |
| Package Downloads Report | Download Stats |