conumee
This is the development version of conumee; for the stable release version, see conumee.
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Bioconductor version: Development (3.20)
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
Author: Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee at hovestadt.bio>
Citation (from within R, enter
citation("conumee")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("conumee")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("conumee")
conumee | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software |
Version | 1.39.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.5.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest |
Imports | methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown, minfiData, RCurl |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | conumee_1.39.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | conumee_1.39.0.tgz |
macOS Binary (arm64) | conumee_1.39.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/conumee |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/conumee |
Bioc Package Browser | https://code.bioconductor.org/browse/conumee/ |
Package Short Url | https://bioconductor.org/packages/conumee/ |
Package Downloads Report | Download Stats |