ENmix
This is the development version of ENmix; for the stable release version, see ENmix.
Quality control and analysis tools for Illumina DNA methylation BeadChip
Bioconductor version: Development (3.21)
Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.
Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]
Maintainer: Zongli Xu <xuz at niehs.nih.gov>
Citation (from within R, enter
citation("ENmix")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ENmix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ENmix")
ENmix User's Guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel |
Version | 1.43.2 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | Artistic-2.0 |
Depends | parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0) |
Imports | grDevices, graphics, matrixStats, methods, utils, irlba, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors |
System Requirements | |
URL | https://github.com/Bioconductor/ENmix |
Bug Reports | https://github.com/Bioconductor/ENmix/issues |
See More
Suggests | minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ENmix_1.43.2.tar.gz |
Windows Binary (x86_64) | ENmix_1.43.2.zip |
macOS Binary (x86_64) | ENmix_1.43.2.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/ENmix |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ENmix |
Bioc Package Browser | https://code.bioconductor.org/browse/ENmix/ |
Package Short Url | https://bioconductor.org/packages/ENmix/ |
Package Downloads Report | Download Stats |