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Annotation package for TxDb object(s)

Bioconductor version: Release (3.19)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version 3.2.2
License Artistic-2.0
Depends GenomicFeatures(>= 1.21.30)
Imports AnnotationDbi
System Requirements
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Linking To
Depends On Me FDb.InfiniumMethylation.hg19, Homo.sapiens, annotation, variants
Imports Me appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, epimutacions, HiLDA, musicatk, nearBynding, OutSplice, RareVariantVis, RgnTX, rGREAT, signifinder, UMI4Cats, uncoverappLib, cinaR, driveR, oncoPredict
Suggests Me AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, ChIPpeakAnno, chromPlot, CNVRanger, cpvSNP, CRISPRseek, derfinder, derfinderPlot, dmrseq, EpiMix, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, GenVisR, ggbio, gmapR, GRaNIE, groHMM, GUIDEseq, gwascat, HelloRanges, HTSeqGenie, karyoploteR, MAST, MesKit, MutationalPatterns, NanoMethViz, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionalpcs, regionReport, RiboProfiling, rtracklayer, SGSeq, SigFuge, SOMNiBUS, spatzie, SplicingGraphs, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, tidyCoverage, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering, VariantTools,, Mega2R, MOCHA, SNPassoc
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Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
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