alabaster.matrix
This is the released version of alabaster.matrix; for the devel version, see alabaster.matrix.
Load and Save Artifacts from File
Bioconductor version: Release (3.23)
Save matrices, arrays and similar objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("alabaster.matrix")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.matrix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.matrix")| Saving and loading arrays | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, DataRepresentation, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3.5 years) |
| License | MIT + file LICENSE |
| Depends | alabaster.base |
| Imports | methods, BiocGenerics, S4Vectors, DelayedArray(>= 0.33.3), S4Arrays, SparseArray(>= 1.5.22), rhdf5(>= 2.47.1), HDF5Array, Matrix, Rcpp |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr, BiocStyle, chihaya, BiocSingular, ResidualMatrix |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | alabaster, alabaster.se, celldex, scMultiome, scRNAseq |
| Suggests Me | alabaster.base |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alabaster.matrix_1.12.0.tar.gz |
| Windows Binary (x86_64) | alabaster.matrix_1.12.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | alabaster.matrix_1.12.0.tgz |
| macOS Binary (sonoma-arm64) | alabaster.matrix_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.matrix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.matrix |
| Bioc Package Browser | https://code.bioconductor.org/browse/alabaster.matrix/ |
| Package Short Url | https://bioconductor.org/packages/alabaster.matrix/ |
| Package Downloads Report | Download Stats |