Fletcher2013a
This is the development version of Fletcher2013a; for the stable release version, see Fletcher2013a.
Gene expression data from breast cancer cells under FGFR2 signalling perturbation
Bioconductor version: Development (3.24)
The package Fletcher2013a contains time-course gene expression data from MCF-7 cells treated under different experimental systems in order to perturb FGFR2 signalling. The data comes from Fletcher et al. (Nature Comms 4:2464, 2013) where further details about the background and the experimental design of the study can be found.
Author: Mauro Castro, Michael Fletcher, Florian Markowetz and Kerstin Meyer.
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
citation("Fletcher2013a")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Fletcher2013a")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Fletcher2013a")| Main vignette:Fletcher2013a | R Script | |
| Reference Manual |
Details
| biocViews | BreastCancerData, CancerData, ExperimentData, ExpressionData, MicroarrayData |
| Version | 1.49.0 |
| License | GPL (>= 2) |
| Depends | R (>= 2.15), limma |
| Imports | Biobase, VennDiagram, gplots, grid |
| System Requirements | |
| URL | http://dx.doi.org/10.1038/ncomms3464 |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | NetActivity |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Fletcher2013a_1.49.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/Fletcher2013a |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Fletcher2013a |
| Package Short Url | https://bioconductor.org/packages/Fletcher2013a/ |
| Package Downloads Report | Download Stats |