BasicSTARRseq
This is the development version of BasicSTARRseq; for the stable release version, see BasicSTARRseq.
Basic peak calling on STARR-seq data
Bioconductor version: Development (3.23)
Basic peak calling on STARR-seq data based on a method introduced in "Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq" Arnold et al. Science. 2013 Mar 1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013 Jan 17.
Author: Annika Buerger
Maintainer: Annika Buerger <annika.buerger at ukmuenster.de>
Citation (from within R, enter
citation("BasicSTARRseq")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BasicSTARRseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Coverage, FunctionalGenomics, FunctionalPrediction, GeneRegulation, PeakDetection, Software |
| Version | 1.39.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9.5 years) |
| License | LGPL-3 |
| Depends | GenomicRanges, GenomicAlignments |
| Imports | S4Vectors, methods, IRanges, Seqinfo, stats |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BasicSTARRseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BasicSTARRseq |
| Package Short Url | https://bioconductor.org/packages/BasicSTARRseq/ |
| Package Downloads Report | Download Stats |