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homosapienDEE2CellScore

This is the development version of homosapienDEE2CellScore; for the stable release version, see homosapienDEE2CellScore.

Example Data Package for CellScore


Bioconductor version: Development (3.20)

This is a data package for normalised homosapien data downloaded from DEE2. The package both downloads, normalises, and filters the data, and provides a way to access the data from a canonical store without needing local processing. This package was built as a way to generate and store canonical test data for CellScore.

Author: Justin Marsh [aut, cre]

Maintainer: Justin Marsh <j.marsh at auckland.ac.nz>

Citation (from within R, enter citation("homosapienDEE2CellScore")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("homosapienDEE2CellScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("homosapienDEE2CellScore")
Use the Data in this Data Package HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Genome, RNASeqData
Version 1.1.0
License GPL (>= 3)
Depends
Imports Rtsne (>= 0.15), utils (>= 3.5.0), ExperimentHub, BiocGenerics, DESeq2, S4Vectors, SummarizedExperiment, getDEE2, MatrixGenerics
System Requirements
URL
Bug Reports https://github.com/flaviusb/homosapienDEE2CellScore/issues
See More
Suggests knitr, rmarkdown, devtools, Biobase(>= 2.39.1), BiocManager, AnnotationHubData, ExperimentHubData, AnnotationHub, CellScore(>= 1.21.4)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package homosapienDEE2CellScore_1.1.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/homosapienDEE2CellScore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/homosapienDEE2CellScore
Package Short Url https://bioconductor.org/packages/homosapienDEE2CellScore/
Package Downloads Report Download Stats