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chipseqDBData

This is the development version of chipseqDBData; for the stable release version, see chipseqDBData.

Data for the chipseqDB Workflow


Bioconductor version: Development (3.20)

Sorted and indexed BAM files for ChIP-seq libraries, for use in the chipseqDB workflow. BAM indices are also included.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("chipseqDBData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chipseqDBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseqDBData")
File manifest and statistics HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeqData, ExperimentData, ExperimentHub, SequencingData
Version 1.21.0
License CC BY 4.0
Depends
Imports AnnotationHub, ExperimentHub, Rsamtools, S4Vectors
System Requirements
URL
See More
Suggests knitr, BiocStyle, rmarkdown
Linking To
Enhances
Depends On Me csawBook
Imports Me
Suggests Me chipseqDB
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chipseqDBData_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/chipseqDBData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chipseqDBData
Package Short Url https://bioconductor.org/packages/chipseqDBData/
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