grasp2db
This is the development version of grasp2db; for the stable release version, see grasp2db.
grasp2db, sqlite wrap of GRASP 2.0
Bioconductor version: Development (3.24)
grasp2db, sqlite wrap of NHLBI GRASP 2.0, an extended GWAS catalog.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
citation("grasp2db")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("grasp2db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("grasp2db")| grasp2db: interface to a high density GWAS catalogue | R Script | |
| Notes on Bioconductor's GRASP2 database curation | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| LICENSE | Text |
Details
| biocViews | AnnotationData |
| Version | 1.1.1 |
| License | Artistic-2.0 + file LICENSE |
| Depends | RSQLite, dplyr, dbplyr |
| Imports | methods, utils, stats, Seqinfo, GenomeInfoDb, AnnotationHub, digest |
| System Requirements | |
| URL |
See More
| Suggests | gwascat, knitr |
| Linking To | |
| Enhances | AnnotationHubData |
| Depends On Me | |
| Imports Me | |
| Suggests Me | AnnotationHubData |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | grasp2db_1.1.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/grasp2db/ |
| Package Downloads Report | Download Stats |