alternativeSplicingEvents.hg38
This is the development version of alternativeSplicingEvents.hg38; for the stable release version, see alternativeSplicingEvents.hg38.
Alternative splicing event annotation for Human (hg38)
Bioconductor version: Development (3.24)
Data frame containing alternative splicing events. The splicing events were compiled from the annotation files used by the alternative splicing quantification tools MISO, VAST-TOOLS, SUPPA and rMATS.
Author: Nuno Agostinho
Maintainer: Nuno Agostinho <nunodanielagostinho at gmail.com>
citation("alternativeSplicingEvents.hg38")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("alternativeSplicingEvents.hg38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, AnnotationHub |
| Version | 1.1.0 |
| License | MIT + file LICENSE |
| Depends | |
| Imports | AnnotationHub |
| System Requirements | |
| URL | https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38 |
| Bug Reports | https://github.com/nuno-agostinho/alternativeSplicingEvents.hg38/issues |
See More
| Suggests | dplyr, GenomicRanges, S4Vectors |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | alternativeSplicingEvents.hg38_1.1.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/alternativeSplicingEvents.hg38/ |
| Package Downloads Report | Download Stats |