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This is the development version of compEpiTools; for the stable release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: Development (3.20)

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]

Maintainer: Mattia Furlan <mattia.furlan at>

Citation (from within R, enter citation("compEpiTools")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

compEpiTools.pdf PDF R Script
Reference Manual PDF


biocViews Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization
Version 1.39.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL
Depends R (>= 3.5.0), methods, topGO, GenomicRanges
Imports AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb
System Requirements
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Suggests BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene,, knitr, rtracklayer
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Follow Installation instructions to use this package in your R session.

Source Package compEpiTools_1.39.0.tar.gz
Windows Binary
macOS Binary (x86_64) compEpiTools_1.39.0.tgz
macOS Binary (arm64) compEpiTools_1.39.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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