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This is the development version of CGHcall; for the stable release version, see CGHcall.

Calling aberrations for array CGH tumor profiles.

Bioconductor version: Development (3.20)

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author: Mark van de Wiel, Sjoerd Vosse

Maintainer: Mark van de Wiel <mark.vdwiel at>

Citation (from within R, enter citation("CGHcall")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

CGHcall PDF R Script
Reference Manual PDF


biocViews Microarray, Preprocessing, Software, Visualization
Version 2.67.0
In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)
License GPL (
Depends R (>= 2.0.0), impute(>= 1.8.0), DNAcopy(>= 1.6.0), methods, Biobase, CGHbase(>= 1.15.1), snowfall
System Requirements
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Linking To
Depends On Me CGHnormaliter, GeneBreak
Imports Me CGHnormaliter, QDNAseq
Suggests Me
Links To Me
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Source Package CGHcall_2.67.0.tar.gz
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macOS Binary (x86_64) CGHcall_2.67.0.tgz
macOS Binary (arm64) CGHcall_2.67.0.tgz
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