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restfulSE

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interface


Bioconductor version: Release (3.19)

This package provides functions and classes to interface with remote data stores by operating on SummarizedExperiment-like objects.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <shwetagopaul92 at gmail.com>

Citation (from within R, enter citation("restfulSE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("restfulSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Coverage, Infrastructure, Sequencing, SingleCell, Software, Transcriptomics
Version 1.26.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.6), SummarizedExperiment, DelayedArray
Imports utils, stats, methods, S4Vectors, Biobase, reshape2, AnnotationDbi, DBI, GO.db, rhdf5client, dplyr (>= 0.7.1), magrittr, bigrquery, ExperimentHub, AnnotationHub, rlang
System Requirements
URL
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Suggests knitr, testthat, Rtsne, org.Mm.eg.db, org.Hs.eg.db, BiocStyle, restfulSEData, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/restfulSE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/restfulSE
Package Short Url https://bioconductor.org/packages/restfulSE/
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