Package: chipseqDB
Title: A Bioconductor Workflow to Detect Differential Binding in
        ChIP-seq Data
Version: 1.34.0
Date: 2020-11-25
Authors@R: c(person(role=c("aut","cre"), "Aaron", "Lun", email = "infinite.monkeys.with.keyboards@gmail.com"),
        person(role="aut", "Gordon ", "Smyth"))
Description: Describes a computational workflow for performing a DB analysis with sliding windows.
        The aim is to facilitate the practical implementation of window-based DB analyses by providing detailed code and expected output.
        The workflow described here applies to any ChIP-seq experiment with multiple experimental conditions and multiple biological samples in one or more of the conditions.
        It detects and summarizes DB regions between conditions in a de novo manner, i.e., without making any prior assumptions about the location or width of bound regions.
        Detected regions are then annotated according to their proximity to genes.
Suggests: chipseqDBData, BiocStyle, BiocFileCache, ChIPpeakAnno, Gviz,
        Rsamtools, TxDb.Mmusculus.UCSC.mm10.knownGene, csaw, edgeR,
        knitr, org.Mm.eg.db, rtracklayer, rmarkdown
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: ImmunoOncologyWorkflow, Workflow, EpigeneticsWorkflow
Workflow: true
NeedsCompilation: no
URL: https://www.bioconductor.org/help/workflows/chipseqDB/
git_url: https://git.bioconductor.org/packages/chipseqDB
git_branch: RELEASE_3_22
git_last_commit: 609e038
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-04
Packaged: 2025-11-04 18:05:02 UTC; biocbuild
Author: Aaron Lun [aut, cre],
  Gordon Smyth [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
