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RNA-seq data generated from SEQC (MAQC-III) study

Bioconductor version: Release (3.19)

The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.

Author: Yang Liao and Wei Shi with contributions from Gordon K Smyth and Steve Lianoglou.

Maintainer: Yang Liao <Yang.Liao at> and Wei Shi <Wei.Shi at>

Citation (from within R, enter citation("seqc")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

SEQC Vignette PDF R Script
Reference Manual PDF


biocViews ExperimentData, RNASeqData, SequencingData, qPCRData
Version 1.38.0
License GPL-3
Depends R (>= 2.10)
Imports utils, Biobase
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Source Package seqc_1.38.0.tar.gz
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