bladderbatch
This is the released version of bladderbatch; for the devel version, see bladderbatch.
Bladder gene expression data illustrating batch effects
Bioconductor version: Release (3.23)
This package contains microarray gene expression data on 57 bladder samples from 5 batches. The data are used as an illustrative example for the sva package.
Author: Jeffrey T. Leek <jleek at jhsph.edu>
Maintainer: Jeffrey T. Leek <jleek at jhsph.edu>
citation("bladderbatch")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("bladderbatch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bladderbatch")| bladderbatchTutorial | R Script | |
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, MicroarrayData |
| Version | 1.50.0 |
| License | Artistic-2.0 |
| Depends | Biobase |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | RUVcorr |
| Suggests Me | BatchQC, Harman, sva |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | bladderbatch_1.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/bladderbatch |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/bladderbatch |
| Package Short Url | https://bioconductor.org/packages/bladderbatch/ |
| Package Downloads Report | Download Stats |