VariantToolsData
This is the released version of VariantToolsData; for the devel version, see VariantToolsData.
Data for the VariantTools tutorial
Bioconductor version: Release (3.23)
Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla at gene.com>
citation("VariantToolsData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VariantToolsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("VariantToolsData")| VariantTools Example Data | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, HapMap, SNPData, SequencingData |
| Version | 1.36.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), VariantAnnotation(>= 1.7.35) |
| Imports | BiocGenerics, GenomicRanges |
| System Requirements | |
| URL |
See More
| Suggests | VariantTools(>= 1.3.4), gmapR(>= 1.3.3), BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | VariantToolsData_1.36.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/VariantToolsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/VariantToolsData |
| Package Short Url | https://bioconductor.org/packages/VariantToolsData/ |
| Package Downloads Report | Download Stats |