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Timer Quantification

Bioconductor version: Release (3.19)

Supplementary Data package for tandem timer methods paper by Barry et al. (2015) including TimerQuant shiny applications.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at>

Citation (from within R, enter citation("TimerQuant")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Supplementary Methods - automatic generation of paper figures PDF R Script
Supplementary Methods - mathematical derivations PDF R Script
Reference Manual PDF


biocViews Danio_rerio_Data, ExperimentData, HighThroughputImagingData, Tissue
Version 1.34.0
License Artistic-2.0
Depends shiny
Imports ggplot2, grid, gridExtra, deSolve, dplyr, locfit
System Requirements
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Suggests BiocStyle, reshape2, knitr, shinyBS
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Follow Installation instructions to use this package in your R session.

Source Package TimerQuant_1.34.0.tar.gz
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macOS Binary (x86_64)
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Source Repository git clone
Source Repository (Developer Access) git clone
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