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Collection of Xenium spatial data by 10X genomics

Bioconductor version: Release (3.19)

Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.

Author: Matineh Rahmatbakhsh [aut, cre], Monica Ge [aut]

Maintainer: Matineh Rahmatbakhsh <matinerb.94 at>

Citation (from within R, enter citation("TENxXeniumData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

TENxXeniumData HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, SpatialData
Version 1.0.0
License MIT + file LICENSE
Depends ExperimentHub
Imports SpatialExperiment, SpatialFeatureExperiment, BumpyMatrix, SummarizedExperiment, utils
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Follow Installation instructions to use this package in your R session.

Source Package TENxXeniumData_1.0.0.tar.gz
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