MafDb.ExAC.r1.0.nonTCGA.hs37d5
This is the released version of MafDb.ExAC.r1.0.nonTCGA.hs37d5; for the devel version, see MafDb.ExAC.r1.0.nonTCGA.hs37d5.
Minor allele frequency data from ExAC release 1.0 subset of nonTCGA exomes for hs37d5
Bioconductor version: Release (3.23)
Store minor allele frequency data from the Exome Aggregation Consortium (ExAC release 1.0 subset of nonTCGA exomes) for the human genome version hs37d5.
Author: Robert Castelo
Maintainer: Robert Castelo <robert.castelo at upf.edu>
citation("MafDb.ExAC.r1.0.nonTCGA.hs37d5")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MafDb.ExAC.r1.0.nonTCGA.hs37d5")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, Genetics, GenomicScores, Homo_sapiens |
| Version | 3.10.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), GenomicScores(>= 1.9.6) |
| Imports | utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | SNPlocs.Hsapiens.dbSNP144.GRCh37 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MafDb.ExAC.r1.0.nonTCGA.hs37d5_3.10.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/MafDb.ExAC.r1.0.nonTCGA.hs37d5/ |
| Package Downloads Report | Download Stats |