IlluminaHumanMethylationEPICv2anno.20a1.hg38
This is the released version of IlluminaHumanMethylationEPICv2anno.20a1.hg38; for the devel version, see IlluminaHumanMethylationEPICv2anno.20a1.hg38.
Annotation for Illumina's EPIC v2.0 methylation arrays
Bioconductor version: Release (3.23)
An annotation package for Illumina's EPIC v2.0 methylation arrays. The version 2 covers more than 935K CpG sites in the human genome hg38. It is an update of the original EPIC v1.0 array (i.e., the 850K methylation array).
Maintainer: Zuguang Gu <guzuguang at suat-sz.edu.cn>
citation("IlluminaHumanMethylationEPICv2anno.20a1.hg38")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IlluminaHumanMethylationEPICv2anno.20a1.hg38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IlluminaHumanMethylationEPICv2anno.20a1.hg38")| Use of IlluminaHumanMethylationEPICv2anno.20a1.hg38 | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, Homo_sapiens, IlluminaChip |
| Version | 1.0.1 |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0), minfi |
| Imports | utils |
| System Requirements | |
| URL | https://www.illumina.com/products/by-type/microarray-kits/infinium-methylation-epic.html |
See More
| Suggests | knitr, IlluminaHumanMethylationEPICanno.ilm10b4.hg19 |
| Linking To | |
| Enhances | |
| Depends On Me | missMethyl |
| Imports Me | |
| Suggests Me | DMRcate |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IlluminaHumanMethylationEPICv2anno.20a1.hg38_1.0.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/IlluminaHumanMethylationEPICv2anno.20a1.hg38/ |
| Package Downloads Report | Download Stats |