BSgenome.Gmax.NCBI.Gmv40
This is the released version of BSgenome.Gmax.NCBI.Gmv40; for the devel version, see BSgenome.Gmax.NCBI.Gmv40.
Full genome sequences for Glycine max (Gmv40)
Bioconductor version: Release (3.23)
Full genome sequences for Glycine max as provided by NCBI (assembly Glycine_max_v4.0, assembly accession GCF_000004515.5) and stored in Biostrings objects.
Author: Deisiany Ferreira Neres <deisianyufg at gmail.com>
Maintainer: Deisiany Ferreira Neres <deisianyufg at gmail.com>, Clay Wright <wright.clay at gmail.com>
citation("BSgenome.Gmax.NCBI.Gmv40")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Gmax.NCBI.Gmv40")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, BSgenome, Genetics, Glycine_max |
| Version | 4.0 |
| License | Creative Commons Legal Code + file LICENSE |
| Depends | R (>= 3.5.0), BSgenome(>= 1.63.4) |
| Imports | BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.Gmax.NCBI.Gmv40_4.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.Gmax.NCBI.Gmv40/ |
| Package Downloads Report | Download Stats |