BSgenome.Alyrata.JGI.v1
This is the released version of BSgenome.Alyrata.JGI.v1; for the devel version, see BSgenome.Alyrata.JGI.v1.
Arabidopsis lyrata full genome (JGI version V1.0)
Bioconductor version: Release (3.23)
Arabidopsis lyrata 8x Release [project ID 4002920] as provided by JGI ( snapshot from March 24, 2011) and stored in Biostrings objects.
Author: Jian-Feng Mao and Ya-Long Guo, with acknowledgement to Detlef Weigel
Maintainer: Jian-Feng Mao <jianfeng.mao at gmail.com>
citation("BSgenome.Alyrata.JGI.v1")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Alyrata.JGI.v1")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Alyrata, AnnotationData, Genetics |
| Version | 1.0.1 |
| License | Artistic-2.0 |
| Depends | BSgenome(>= 1.58.0) |
| Imports | BSgenome |
| System Requirements | |
| URL |
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Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.Alyrata.JGI.v1_1.0.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.Alyrata.JGI.v1/ |
| Package Downloads Report | Download Stats |