pcaExplorer User Guide

Federico Marini1,2* and Harald Binder1

1Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz
2Center for Thrombosis and Hemostasis (CTH), Mainz

*marinif@uni-mainz.de

Abstract

pcaExplorer provides functionality for interactive visualization of RNA-seq datasets based on Principal Components Analysis. Such methods allow for quick information extraction and effective data exploration. A Shiny application encapsulates the whole analysis, and is developed to become a practical companion for any RNA-seq dataset. This app supports reproducible research with state saving and automated report generation.

Package

pcaExplorer 3.6.0

Package: pcaExplorer
Authors: Federico Marini [aut, cre] (ORCID: https://orcid.org/0000-0003-3252-7758)
Version: 3.6.0
Compiled date: 2026-04-28
Last edited: 2019-02-26
License: MIT + file LICENSE