Package: zitools
Title: Analysis of zero-inflated count data
Version: 1.4.0
Authors@R: 
    person("Carlotta", "Meyring", , "carlotta.meyring@uniklinik-freiburg.de", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0000-6201-7615"))
Description: 
  zitools allows for zero inflated count data analysis by either using 
  down-weighting of excess zeros or by replacing an appropriate proportion of 
  excess zeros with NA. Through overloading frequently used statistical 
  functions (such as mean, median, standard deviation), plotting functions 
  (such as boxplots or heatmap) or differential abundance tests, it allows a 
  wide range of downstream analyses for zero-inflated data in a less biased 
  manner. This becomes applicable in the context of microbiome analyses, where 
  the data is often overdispersed and zero-inflated, therefore making data 
  analysis extremly challenging. 
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: phyloseq, pscl, ggplot2, MatrixGenerics, SummarizedExperiment,
        stats, VGAM, matrixStats, tidyr, tibble, dplyr, DESeq2,
        reshape2, RColorBrewer, magrittr, BiocGenerics, graphics, utils
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), tidyverse,
        microbiome
Config/testthat/edition: 3
Collate: 'data.R' 'globals.R' 'ziMain.R' 'helper.R'
        'inherited_functions.R' 'plots.R' 'utils.R' 'zitools-package.R'
Depends: R (>= 4.4.0), methods
VignetteBuilder: knitr
biocViews: Software, StatisticalMethod, Microbiome
URL: https://github.com/kreutz-lab/zitools
BugReports: https://github.com/kreutz-lab/zitools/issues
git_url: https://git.bioconductor.org/packages/zitools
git_branch: RELEASE_3_22
git_last_commit: c4def98
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 07:15:06 UTC; biocbuild
Author: Carlotta Meyring [aut, cre] (ORCID:
    <https://orcid.org/0009-0000-6201-7615>)
Maintainer: Carlotta Meyring <carlotta.meyring@uniklinik-freiburg.de>
