878343979274e90ea5df5be28648c9b8 *DESCRIPTION
4ea9c84eaa86ffd6c6938ee47c928c32 *NAMESPACE
44abbc296e888af5a723f67df977e510 *NEWS
ae988b77bff6126da731e6c4b918032f *R/MotifScanningFunctions.R
a07cbc3995298135816e5f3db4533497 *R/MotifScanningMethods.R
9cb8a2e91b1067b105d00befb19c71ec *R/PatternOccurrenceFunctions.R
5245b5812056525ccf23a2b5202822ac *R/PatternOccurrenceMethods.R
c7d56243519106b7dc4e87e8e85306fa *R/PlottingFunctions.R
066974a39f69ff122c48332894699f0d *R/PlottingMethods.R
1f0db6afae74dc7b8b5df8d2348aa29e *build/vignette.rds
2b529418489c56af34b70200b2cfe7bf *data/TBPpwm.RData
33f5e889864e04ccc77fa5c25855b431 *data/datalist
99eb5b24f2a49c9bb614889be6157a65 *data/zebrafishPromoters.RData
950a447bb8dabb8514552455624ad4ed *data/zebrafishPromoters24h.RData
50cb808aa34724dac0cb26f1a8e866fc *inst/doc/seqPattern.R
12529414fb453027b7cc4a8e1e292780 *inst/doc/seqPattern.Rnw
c62c0ae7cdcc6a6f7ef99025f126f46b *inst/doc/seqPattern.pdf
183834a30fc58606917b07ebf2ffa5d4 *inst/unitTests/test_MotifScanningFunctions.R
1a45081d78c7ebe89fa06af7fd86b875 *inst/unitTests/test_MotifScanningMethods.R
c97d2d34ed9a25e1417a2c2844e7af34 *inst/unitTests/test_PatternOccurrenceFunctions.R
1e91f5e0597eb1c59740b0bdd5376123 *inst/unitTests/test_PatternOccurrenceMethods.R
ca651b4a1e6aeb2b5fab30e3be99c665 *man/TBPpwm.Rd
d66dd3315242d2608c3dfe278785988a *man/getPatternOccurrenceList.Rd
159723d820fa339c43dd0c641c99ea8d *man/motifScanHits.Rd
79b84a4d251633c6fd1d019aabcc5bca *man/motifScanScores.Rd
d0bd2005d4c1910616a594b135fbacdc *man/plotMotifDensityMap.Rd
525c139d23533cccd3d50d3b49416b6a *man/plotMotifOccurrenceAverage.Rd
0574654fb7db86d854e9125b92d51427 *man/plotMotifScanScores.Rd
81959bde547ed430887cc0705597131c *man/plotPatternDensityMap.Rd
0377952fd8cab2d1e5ff4af39bbc1a81 *man/plotPatternOccurrenceAverage.Rd
8764f41b01280facb6948c6dfe268857 *man/seqPattern-package.Rd
28cf09cf8cd30e42b1d611821464039d *man/zebrafisPromoters.Rd
5b73075ae4aaed22dcb92d44066de9e9 *man/zebrafisPromoters24h.Rd
8754d83f2facb24c20bd0197b8fc0c23 *tests/runTests.R
8cfc1ec6cebd833ab61fe3294362425f *vignettes/images/ColorPalettes.pdf
85d96b898288e51629f2b657e3d3ac8f *vignettes/images/ConsensusDensity.jpg
054f27756d9c4c1ad134a5180346943e *vignettes/images/DensitySchematic.pdf
585d2c5abc3f5df7a8e7c5e8e484c90d *vignettes/images/MetaoligonucleotideDensity.jpg
39a0592908c2638706becd43cd82b468 *vignettes/images/MotifAverage.pdf
a6d1f48ccf6f94a54048c4aca5e66510 *vignettes/images/MotifDensity.jpg
901dfc0d52c77e056896072bea40d984 *vignettes/images/OligonucleotideAverage.pdf
4326ab326f1a4149db776ec07b438a37 *vignettes/images/OligonucleotideDensity.jpg
12529414fb453027b7cc4a8e1e292780 *vignettes/seqPattern.Rnw
fd9b306997d0089a12b523828081591c *vignettes/seqPattern.bib
