Package: regioneR
Type: Package
Title: Association analysis of genomic regions based on permutation
        tests
Version: 1.42.0
Date: 2025-06-20
Author: Anna Diez-Villanueva <adiez@iconcologia.net>, Roberto Malinverni
    <roberto.malinverni@gmail.com> and Bernat Gel <bgel@igtp.cat>
Maintainer: Bernat Gel <bgel@imppc.org>
Description: regioneR offers a statistical framework based on
    customizable permutation tests to assess the association
    between genomic region sets and other genomic features.
License: Artistic-2.0
Depends: GenomicRanges
Imports: memoise, GenomicRanges, IRanges, BSgenome, Biostrings,
        rtracklayer, parallel, graphics, stats, utils, methods,
        Seqinfo, GenomeInfoDb, S4Vectors, tools
Suggests: BiocStyle, knitr, rmarkdown,
        BSgenome.Hsapiens.UCSC.hg19.masked, testthat
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: Genetics, ChIPSeq, DNASeq, MethylSeq, CopyNumberVariation
NeedsCompilation: no
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/regioneR
git_branch: RELEASE_3_22
git_last_commit: eb018a1
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 06:01:34 UTC; biocbuild
