50362af8d7fc2b6753db8895c3dbdf75 *DESCRIPTION
b80aa5a0233cbd0d997b3f34ccb22a9d *LICENSE
c474e53bf80a45aef3bc971ad82d3b25 *NAMESPACE
1b3a48791140f17ed5c9a62b1487eb15 *NEWS
5073311dd86adf47d358f00fed484a94 *R/00_S4_generic_methods.R
6f6362bf55e8082349e50b089b21df50 *R/00_global.R
e995ebb4d45e074c8b30233a08731110 *R/RcppExports.R
33fbd613a8546ef86138f57cbc6c17c9 *R/extend.R
f059b7c0ef46fab89659f0dedf1ad828 *R/get_data.R
492ed06ad46e75977c38c5f3ed048b65 *R/great_client.R
a0a9c978baec45f6c91a2df7450cdfe7 *R/great_local.R
27bf332014fc3b1ead882fddac5074f1 *R/ncbi.R
c470ea0faed99b016a35d84595066cc1 *R/shiny.R
52256563f3ddcfc971fdc7734145f903 *R/utils.R
0dcb5d6ddc64a054fe21ba3f8480a22b *R/volcano.R
1b5ef9b2a1020ee224050fcfe4fc840f *R/zzz.R
d46400442c3de873fd38a0b0d056fed6 *build/vignette.rds
f7152f5883cf8852f9bd9c373470dec8 *inst/CITATION
75e521061f28593e721a5567e47d5b33 *inst/doc/rGREAT.Rmd
496d54574464f16bd5f90952dee806dd *inst/doc/rGREAT.html
f1b56d79bd1d0925d2a21c5e9e1b9eb0 *inst/extdata/CHR_LEN_DB.rds
1213f457482edeb0f32817b4414397a9 *inst/extdata/GREATv4.genes.hg19.tsv.gz
d8fe1a3d0a3369cc49ff84e51ae66545 *inst/extdata/GREATv4.genes.hg38.tsv.gz
ab772dbd03e1bf52e27e05a4112e8267 *inst/extdata/GREATv4.genes.mm10.tsv.gz
e080f4548b12124f3d3c2b7be2b442b8 *inst/extdata/GREATv4.genes.mm9.tsv.gz
f84fa0d9bed96c6cceb2125ff9656f15 *inst/extdata/GreatJob.rds
eb14ac86e7554a11d6a583bfde45c5b9 *inst/extdata/GreatObject.rds
c73d78b680f4b40785a310be565a8f22 *inst/extdata/bioc_anno_pkgs.csv
b16416fdecc52dad8f9ff35745c1e202 *inst/extdata/biomart_genesets.R
b96d8ab5417148edc6faa2205bcbbcef *inst/extdata/download_ncbi_genome_data.pl
a3bd4baa519cd1412826e58af6824e0b *inst/extdata/gencode_gene.rds
f981bcfd3284508052510a78b97872c3 *inst/extdata/msigdb_genesets.R
ab9573a3471ea6aead440f3891224197 *inst/extdata/objects.R
42e3cd7c4eec6ad72cf43438fb493a38 *inst/extdata/parse_gencode.pl
d560723089fc51b8349af80bf067ee5a *inst/extdata/tb_encTfChipPkENCFF215YWS_GM12878_MYB_hg19.bed.gz
88308ee67586449b1cc0ed9d65e5f484 *inst/extdata/ucsc_gaps.rds
39e3222a22a12e4c31c3bbf8498591e4 *man/GreatJob-class.rd
4bdfad18c03ca918d0476c52c416dd25 *man/GreatJob.rd
391dc92d75c8de3ca361d04a4e937457 *man/GreatObject-class.Rd
4b1b60c9339de0f7f4c9589618f5464d *man/GreatObject.Rd
2ca0b45eefc69e43cea65ecb0519485e *man/availableCategories-GreatJob-method.rd
7e39f478c286ba7432e8923bd0fb45d1 *man/availableOntologies-GreatJob-method.rd
2296030100b320abfd360ee9d890806b *man/extendTSS.Rd
2c75d5d84d4eea1336bf1102f0984a06 *man/extendTSSFromDataFrame.Rd
6677979fe95a5c4cba8f5aafa08509df *man/extendTSSFromOrgDb.Rd
bf96ed09cb8404c74cc10b36948a4c65 *man/extendTSSFromTxDb.Rd
844420ead7e7f21c8225d6a55727380f *man/getEnrichmentTable-GreatJob-method.Rd
2709e4998fbc9bb2f553697c57e6e29f *man/getEnrichmentTable-GreatObject-method.Rd
03ef7d257e5c4375fc3028c3d84c7ea1 *man/getEnrichmentTable-dispatch.Rd
e62274a7cc5c259123caaf3d73d580ec *man/getEnrichmentTables-GreatJob-method.rd
f7f1375a6171d82f4a92b71d3d2b054c *man/getEnrichmentTables-GreatObject-method.Rd
dab713befe2713c244d623ada2ecd513 *man/getEnrichmentTables-dispatch.Rd
203d393f6431e5a67979fe78935925fe *man/getGREATDefaultTSS.Rd
b220e0676ea429dda73daa5743c94c57 *man/getGapFromUCSC.Rd
8beb656c42966caea1e1bb4b6c814242 *man/getGeneSetsFromBioMart.Rd
e08ad00e09a758059f4b16d5b8e4bcba *man/getGeneSetsFromOrgDb.Rd
e18f399bd8dae05a2814989e8631f802 *man/getGenesFromGencode.Rd
d15b88779538f5376e03eead2fd4223e *man/getGenomeDataFromNCBI.Rd
589f7ee695286994d0ebd58e8825748f *man/getKEGGGenome.Rd
168f8852d7bcf6bc6537ab503113a48f *man/getKEGGPathways.Rd
cdaff653fbafa36a4ba6afb34aee4d26 *man/getRefSeqGenesFromUCSC.Rd
c3c16599f1afc934158525b3908a2f16 *man/getRegionGeneAssociations-GreatJob-method.Rd
9788991579a6657a7cd319735ef524e4 *man/getRegionGeneAssociations-GreatObject-method.Rd
a123fc87874e2741c93ac63c21cf063f *man/getRegionGeneAssociations-dispatch.Rd
bba3aa9637f58529dcdcbe36494b00e0 *man/getTSS.Rd
77886a9004abf5b0ad4d92d088f376f1 *man/great.Rd
8b449de76eac7f8b3aabc1d92d099f55 *man/great_opt.Rd
5cf5bc7b0b8a6b82fd0d598e0f5956da *man/plotRegionGeneAssociationGraphs-GreatJob-method.rd
e92bef66bf46908b75e25b00ee3eb4c9 *man/plotRegionGeneAssociations-GreatJob-method.Rd
9fbf94a5f0a206ce5e82fd474389ace8 *man/plotRegionGeneAssociations-GreatObject-method.Rd
7b63d20a340f63fb5f69f3b38b942431 *man/plotRegionGeneAssociations-dispatch.Rd
736493f8dead2fe6fd03de6ae0558a35 *man/plotVolcano-GreatJob-method.Rd
6456b7c4c432fd23851706636845cd71 *man/plotVolcano-GreatObject-method.Rd
d38dedff9b39e5e9c81d1a9d106cd15c *man/plotVolcano-dispatch.Rd
d543a1aabdc2da353def83bdc53e68a6 *man/randomRegions.Rd
61d282b4fe776553a57ca62b97cb8ea3 *man/randomRegionsFromBioMartGenome.Rd
ce1709a06b5b0407d3f2d8a29ff3045b *man/read_gmt.Rd
91a2ec84a5ec8376b9d324d681b20a7e *man/reduce_by_start_and_end.Rd
4a0314ea2af77efb9e017461eb6c1505 *man/shinyReport-GreatJob-method.Rd
b77f175e5307ccd804aa1bb993920138 *man/shinyReport-GreatObject-method.Rd
f7ffd522ecb1db3df14c31bf44fc2cc7 *man/shinyReport-dispatch.Rd
e3a2b191146627dab12f816f81512165 *man/submitGreatJob.rd
c69798cf900051b5c9f9a08ae9cc75ef *src/RcppExports.cpp
c3d71cfadea875e2599d693e8a430de2 *src/reduce_by_start_and_end.cpp
a06b12e36600dfe2ae68c2815fb6f1dc *tests/test-all.R
2d4483e5ea24b0f8e6b1aa5614d4b1af *tests/testthat/test_available.R
fafff84dda4a90ad4a82cd3da9dcc7c4 *tests/testthat/test_great.R
75e521061f28593e721a5567e47d5b33 *vignettes/rGREAT.Rmd
