f69e2d57ee5a28e777f15c4c276a2fd7 *DESCRIPTION
f666db6c884d471a91e87d6ab654211c *NAMESPACE
457cff7bae525da2ddc936013a0711d2 *NEWS
222db9988dbf0e7937dd71f311c7dff6 *R/AllClass.R
16e55b60c654567014c87d3a91b164df *R/AllGeneric.R
a9628b5f867e2d3a5d47973d0cfd12a1 *R/Defunct.R
4522bc22bbe8c372fadb077c173dbc9f *R/HMgmm-methods.R
1a6e356ab9ff4527e1f69f6809b2cb8d *R/SsdMatrix.R
7cdf65adc3409eac22c75ae03b5aee49 *R/UGgmm-methods.R
68bc00110e0041091e391c33c5d4c58e *R/Utils.R
08365a4c4b92453db149751f8c42ef28 *R/eQTLcross-methods.R
38e2c34798b17a36e06ed428b90cf8dd *R/eQTLnetwork-methods.R
cacdbd17711efb7a3178276a76e5061b *R/eQTLnetworkEstimate.R
8732ab03d5237d3fa8720cea6751c65c *R/eQTLnetworkEstimationParam-methods.R
45e0bcd2dfa8b87086532d27c9eebc0f *R/graphParam-methods.R
7b2692b69d935d461a6622b1cca397de *R/qpCItest.R
1b6bcfadfa010b0f0c250a4ae7f011df *R/qpGraph-methods.R
b99a1962ef758f503f2815c5fa5de61a *R/qpSimulate.R
b6b628fa6405cf3ba37b0144bad48926 *R/qpgraph.R
909834f9edf1672cf6693c775dfa35c9 *R/zzz.R
4b3a9c834003302f6cabef3bc873ee7d *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
a48d0d712c4f62b932429c6436e0c119 *build/vignette.rds
453d5f90bd6225b9bbf8fa9b9dd1e516 *cleanup
32d368ddcca3aaf72a5db5b33d5d2c53 *configure
74f3b11e9f386dc286cb7e529062f360 *configure.ac
9539194962b27fa84c3c067e48d585dd *data/EcoliOxygen.RData
79926fed8e966899f08fe440d8e4a810 *inst/CITATION
d628589e1232c7967bb971802a41a1fe *inst/doc/BasicUsersGuide.pdf
0c821e73601e10be6ec2f8699d9ae4f7 *inst/doc/eQTLnetworks.R
92262933e10e22b20820d8e6ed68722d *inst/doc/eQTLnetworks.Rnw
433c116ed5e7e84072cf28cdae7961cb *inst/doc/eQTLnetworks.pdf
84d3bfa8d19012a3076d4f93ad1411b7 *inst/doc/qpTxRegNet.R
804c33c2a552c6e8097033ef34c65026 *inst/doc/qpTxRegNet.Rnw
8fd546fa7efb5a78259e2c7b95b262a3 *inst/doc/qpTxRegNet.pdf
d7795ff50c5b5b64c2d3780262f11605 *inst/doc/qpgraphSimulate.R
dbe7864def6a58fac3ef9238825ed6dc *inst/doc/qpgraphSimulate.Rnw
d4587b740244eb88ccda9846b99f8d24 *inst/doc/qpgraphSimulate.pdf
34555137cf6e8eba5ce0d8683869d006 *inst/snow/RMPInode.R
144e8535742037fe4097822b1f9a7d45 *inst/snow/RNWSnode.R
81b78d60baecdfae475829f854f9cd17 *inst/snow/RPVMnode.R
56c29a46e22fea2d3cecaa496ecb3bb8 *inst/snow/RSOCKnode.R
fd315f9b340436ab4e7a966a2bd431e6 *inst/unitTests/test_qpCItest.R
ca7997880369d8f67c09b3464b15ad5a *inst/unitTests/test_qpNrr.R
6851a8975fad28b7ca4aa27ccc1079d4 *inst/unitTests/test_rgraphBAM.R
1b9d28fdd729a89666379bc0e83e4fbe *man/EcoliOxygen.Rd
3c79b9659026a88d74de9008b8048769 *man/HMgmm-class.Rd
5e152a264d939442d407c5c6422da3d7 *man/SsdMatrix-class.Rd
55b4c4affd8f8ee559b1901360b03da0 *man/UGgmm-class.Rd
103febb74618aadbf2de0666bbd5050b *man/eQTLcross-class.Rd
888c53d864d4c3d9603062c4315b765c *man/eQTLnetwork-class.Rd
ecfd512cff386927d66b7a1394017ab3 *man/eQTLnetworkEstimate.Rd
a5dc78256375b9e31e36bf904a04fd05 *man/eQTLnetworkEstimationParam-class.Rd
cee5fee368ebb638661c5d5cd82c5dc9 *man/filterCollinearities.Rd
1bcb9b90ba8c0d7ce53a4aaadf90c276 *man/graphParam-class.Rd
892e18084146ea0e285c5ed39ce55bc3 *man/qpAllCItests.Rd
9b78378062e44f0a37b558f6562b21ab *man/qpAnyGraph.Rd
195edcd7ee7c8df6fe6b29f5c4a73bf9 *man/qpAvgNrr.Rd
2e2fd0fc60fc4db30f214d314da8f605 *man/qpBoundary.Rd
6e6aea1dbbfa1b03116734f49f39585b *man/qpCItest.Rd
6167f7ae4fa2865cd415f4184140ddf6 *man/qpClique.Rd
716bbee72cc66fab099a97ef70eb578e *man/qpCliqueNumber.Rd
7d8f963f100aa384712c48a257af9a20 *man/qpCov.Rd
e679aae78d416f23642415fd69f8a297 *man/qpEdgeNrr.Rd
8ba56972db6de86bb7136182a1166835 *man/qpFunctionalCoherence.Rd
b81760ef7c2ff2f1d1ce4f97e40c931e *man/qpG2Sigma.Rd
29dfd386540a586d414e9a0115bb3c8d *man/qpGenNrr.Rd
78fae422396e079e55e9537c7593b9d5 *man/qpGetCliques.Rd
81be8974ef850eb1a9d033c65a5fef88 *man/qpGraph-class.Rd
d8753a3a82dfbf13ccc1c173f3e5dc38 *man/qpGraphDensity.Rd
d7026a771e238fddde4cf7023623f1d3 *man/qpHTF.Rd
84dc83bbf254e013d950e17cfd22ed16 *man/qpHist.Rd
07b200df833f052b299c74885fd18d26 *man/qpIPF.Rd
2b83631fb5f5409e2d9175eb051c34bb *man/qpImportNrr.Rd
9bf464f7529c23c3f61d57436018f510 *man/qpK2ParCor.Rd
00f3766861c3076a739ba747175f0949 *man/qpNrr.Rd
2593957e462e1a3d854da3ebcd8d26f7 *man/qpPAC.Rd
58293a60a534e18436c1a9646cc10c0d *man/qpPCC.Rd
5c918bc58d56dde5ee768450ac8ffaf9 *man/qpPRscoreThreshold.Rd
278d452ebb6449211f1db7e075fd282d *man/qpPathWeight.Rd
159684a912403138ce4c47fceb88ec12 *man/qpPlotMap.Rd
f14f0c32fc1407e7779403ac508451dd *man/qpPlotNetwork.Rd
bec07e5d97cf76fc639d9ffe590df725 *man/qpPrecisionRecall.Rd
76d6d5277e9f13267436d9ab62382662 *man/qpRndGraph.Rd
a5c4697a9ed892240761cc55cd9a5923 *man/qpRndWishart.Rd
e6ffb3c904f012b77f9fa0b182af98f6 *man/qpTopPairs.Rd
bddbc062f56ada2a0db15ae883423213 *man/qpUnifRndAssociation.Rd
9f6a8f5fae3a52d0de6f99a063ccb336 *man/qpUpdateCliquesRemoving.Rd
9537c3fcb872d8072dcb365fac2c62a8 *man/qpgraph-package.Rd
5879813499705a7b54ba95f852e50219 *src/Makevars.in
4a68047dfbc70e129c27eec2b0e746f8 *src/Makevars.win
7bbb64fd13c2df1c9f0cbb895cef94ae *src/cliquer.c
49c338ae4c3351c2783c919902e4e024 *src/cliquer.h
c818e1578d8fc27157bab19586fd94d4 *src/cliquerconf.h
6e91a5963791ce711ffc19c5e89b5386 *src/graph.c
7be620122a3caa8fb5df131430bec325 *src/graph.h
8037f795545eb67138704f4359edcffb *src/misc.h
7e46c61c0577267eddce997cf2d823d6 *src/qpgraph.c
3f022fba442862e4f77d216e3a0bcad6 *src/reorder.c
3db5663903c1b9b972d9c6a6fd90d32e *src/reorder.h
cb7ad68b7a84e856c9c63db9ac71869c *src/set.h
38039c62584462051438ce9a692e2e23 *tests/runTests.R
9828f446225b05e296dc404578a4f092 *tools/config.guess
7efa0e8e26af69d26cb455993dc6587a *tools/config.sub
dbf44cd757322fdcb922457bcff2b892 *tools/install-sh
92262933e10e22b20820d8e6ed68722d *vignettes/eQTLnetworks.Rnw
804c33c2a552c6e8097033ef34c65026 *vignettes/qpTxRegNet.Rnw
4a3e3661cc5a38c84a06b257ce3ddbd6 *vignettes/qpgraph.bib
dbe7864def6a58fac3ef9238825ed6dc *vignettes/qpgraphSimulate.Rnw
