cf5d4ec4a07902ff3e15de0a5afcc935 *DESCRIPTION
038052d408277d09561737ba060c5b16 *LICENSE
f44a502dfdde2ce8bf947464bc91f2a2 *NAMESPACE
203e83c6e024cac2f697ba794fa12eea *NEWS
9b54d2e9358e22a83258d2f4109f04db *R/HCT116_r1.R
0c0bb2249bb01181a7c2a7d731b39b0d *R/HCT116_r2.R
206fb24688e31c772fcc8d47c4c0fcbf *R/HCT116_r3.R
c77a8456e230fafe4796c80e3703d675 *R/HCT116_r4.R
70dbb18afb60b26ac3f355cf9402bea0 *R/HCT116_r5.R
eb813d7059c5c34cdcd5e1078e55b51b *R/HCT116_r6.R
785b63cf6ec7ab20746a13deebf98f29 *R/classes.R
1c62902f1ce02ca9d1b5481e43016d0e *R/cyclic_loess.R
4321e040cb80063d9d1e86ad95d92e55 *R/exportJuicebox.R
f42a17565d27f5fa8200e7d3ab996dde *R/fastlo.R
6e6aca229ade8e2f42ce800c6c8787bf *R/filtering.R
60e9d8734a0e31f2f9125e9bd764c6f0 *R/glm.R
a787a8e5445d88dacb4e6aff6854555b *R/hg19_cyto.R
71964c74c3be118ad08a3d7deea142fa *R/hg38_cyto.R
88ab5bf732e390198f0216881f2389ce *R/hicexp2.R
2d896e187c00e14992454e3b805daa7d *R/hicexp_diff.R
2b45c2e852cf79e8568843fc95365b10 *R/library_scaling.R
a4d3d2651f89aaf356c9a7c1d67754dc *R/make_hicexp.R
9064d75e424aae93f6d21638434036b8 *R/manhattan.R
a4fc6befe6c7a151cf1e5e96a9ff2660 *R/perm_test.R
0730c2b5928486fb73e8f6a740e00486 *R/plot_functions.R
d54aeb6828c12407de0ed6e779e78d3a *R/smartApply.R
c8f7507a163a4ee15e2973270a6519bd *R/topDirs.R
8d0a8d4149faca63fa4bcd36d80e19d2 *README.md
f07a95a240294d726ddfe79ce813e9d2 *build/vignette.rds
7097d4a76c62379a9f4973bb5ef5977f *data/HCT116_r1.rda
0cb31a2272c60e1444cfcc9ede39d19c *data/HCT116_r2.rda
1abc7a075b0814967034dd00fd7d874f *data/HCT116_r3.rda
05e3b56db3832325fb6fc5eae0012197 *data/HCT116_r4.rda
4a96f99ad572c81f20ad9f71db1a54f3 *data/HCT116_r5.rda
432cd97f7253e1c1fe20397f2423e6d7 *data/HCT116_r6.rda
abe0fc950f791c71dff2e40b0635de58 *data/hg19_cyto.rda
a966da786ad344244d0efa15fd2747e9 *data/hg38_cyto.rda
c92a7bf1a9d76380c4bc4699acfc52f4 *data/hicexp2.rda
2b0246cc5e2031aff2c9813d89395129 *data/hicexp_diff.rda
dabcd6a0b13c01fda3ab0622cb446846 *inst/CITATION
e66ceb916684180b437d0c52491ed2c6 *inst/doc/juiceboxVisualization.R
3e53f433eb7687167a872f6b00db7431 *inst/doc/juiceboxVisualization.Rmd
413f5a0341740fdff0fc59a6fd61a39e *inst/doc/juiceboxVisualization.html
941b4a23391e511de097b985de6e73d8 *inst/doc/multiHiCcompare.R
95153740616942555f034521444c9ff2 *inst/doc/multiHiCcompare.Rmd
95e983e4c53964a9fbb13d87922488a4 *inst/doc/multiHiCcompare.html
9dcd2aac54dd42a34e494feb055ffb8d *man/HCT116_r1.Rd
ee45e28f8ca2c9f13bfd457385708456 *man/HCT116_r2.Rd
dccee8f5c7a57fd930498b7a5502907a *man/HCT116_r3.Rd
a5d7dfe909d3d4b322a62152a0c7bbee *man/HCT116_r4.Rd
c4e7f7efdd9bc0334894c6b9c0dc8601 *man/HCT116_r5.Rd
830497bf91ed8f485dfbcce28d826dc7 *man/HCT116_r6.Rd
dd2aaecc12b70bf4b966e40df735e6fb *man/Hicexp-class.Rd
f421f84b23d6887491865e8a9e026c6f *man/MD_composite.Rd
eb0cfe1c97b04539bb85381b7e8a016b *man/MD_hicexp.Rd
f0ec2583225e65cc5df8f9618ec465c4 *man/cyclic_loess.Rd
0a8cd59439d5a07729b4eb8ef4fd9590 *man/exportJuicebox.Rd
b1ab7f3d4ae8c14a00463b6d7de719ec *man/fastlo.Rd
6cb11aab045cc7672dd9946a5d8f385f *man/hg19_cyto.Rd
38ecf3e6603f02eedc77ffd0bbde715a *man/hg38_cyto.Rd
5db050e685c9aa7bdb6324686f3faecc *man/hic_exactTest.Rd
5491a05af0c8577a8ba3a6b049aed547 *man/hic_filter.Rd
c934cfaeda75f7148d27de6eadc651f1 *man/hic_glm.Rd
4678b7a9c0747c3bccf5ebbeb1d02432 *man/hic_scale.Rd
866b1cd670b9019f68ed5f2f9276720f *man/hic_table.Rd
cd47361206b9d90d4d8d57e2e4821475 *man/hicexp2.Rd
d239fa4d1ab47ad0080ef1500ff030c8 *man/hicexp_diff.Rd
6fe44ab848dbc08a52d64bb354ead8d2 *man/make_hicexp.Rd
354971d38a9231c56bd5d2c0398a74dc *man/manhattan_hicexp.Rd
e45577e16c7eeb34b30bbb31fe72a6ec *man/meta.Rd
7d5a16dd3d1e870abaffe921d02a9edb *man/normalized.Rd
fcab5831f48a21218e6444f4c79d9afc *man/perm_test.Rd
40e88941606e58d8220d28c63b831638 *man/plot_counts.Rd
430d5ab282138aa591aed1569cb97c6a *man/plot_pvals.Rd
28726d9db3b5a4dd7d86b46acc945e40 *man/pval_heatmap.Rd
fae7ce554b5e9b6f183559533d521831 *man/resolution.Rd
34fc87229f6678bead1faf791a7b46e8 *man/results.Rd
953ab3c515e46adad774831385c0f8f3 *man/show.Rd
2bf7408594061c11b836892626a9040c *man/smartApply.Rd
67b843902581a7b4170b48c74c0816f4 *man/topDirs.Rd
adc11b11349dcac2bbef4975e4fb777d *tests/testthat.R
2fb29cf0232d73869cf7eb80c2de6e94 *tests/testthat/test_comparison.R
77e68c6bf9a819c9418d0c76cf59d9b8 *tests/testthat/test_make_hicexp.R
83ddcfde34df6b4ccafade1c7e4ffe29 *tests/testthat/test_normalization.R
3e53f433eb7687167a872f6b00db7431 *vignettes/juiceboxVisualization.Rmd
95153740616942555f034521444c9ff2 *vignettes/multiHiCcompare.Rmd
1480cd8fac68804689beaa832f4757c8 *vignettes/multiHiCcompare_glm.png
