c50a4eb91418db32b4cc209446f6884b *DESCRIPTION
baf4ea8021c480ded865156e906ceb92 *NAMESPACE
93a67ab855d1c58baa185f205d95755b *NEWS
54c60615af670fe0ffb675de0d3f6cf0 *R/AllClasses.R
9f1b47b21bcecdb8f5546032dd8d4509 *R/AllGenerics.R
0143a22145ffae6bfe568a797a4fbe5e *R/Cache-class.R
b4b60688277e67ebfb07eee8bb053555 *R/GGbio-class.R
8249fe9c9d99a7c22e0503d4b7abf658 *R/Grob-class.R
bbc1f4785bdb3b4bb5835433a8850b5f *R/Plot-class.R
fe6f32b7691dbd7c447c4717d2542ae7 *R/Tracked-class.R
f37eeb3f540f1b9807573adcd059369c *R/Tracks-class.R
2e51b93816b8257d7ce75cc749ab4171 *R/autoplot-method.R
79f7849bb03a8cbaf9eb34b5442bd98d *R/coord_genome-method.R
d701c5cc91054099cbd2bf977582ae2f *R/geom_alignment-method.R
4014dfdc1f47c2e58c11cc5d2259b6b7 *R/geom_arch-method.R
7defd4d503104f086a5d1932d7a9d6d6 *R/geom_arrow-method.R
bbdfbb493421be9c0656d76f7d04152b *R/geom_arrowrect-method.R
b6c151f2b15667e8e2ad0a03b3afa461 *R/geom_bar-method.R
a5ac5712b3f98a555b69427ecdfd7f2c *R/geom_chevron-method.R
c4d6f45f9f31f205763af118c532edc4 *R/geom_rect-method.R
5aa0a595c1dfa52f7bae7700d8908fb2 *R/geom_segment-method.R
f99cfae507a1182553ce80d1d658a98d *R/ggplot-method.R
44d33b4f3800125cca06f076c88d6f40 *R/hack.R
f7025429a6026ac48fde9d1d54717f7f *R/ideogram.R
19b201f1aef58bf1ac6821b02dddf549 *R/layout_circle-method.R
4dc431b0a5ec86770ea2f3997e3d5546 *R/layout_karyogram-method.R
549462c5e535c06ea55b8f90e85cd0ab *R/layout_linear-method.R
08b5a1f1bc8d163dd899eba4589d1fef *R/plotFragLength-method.R
94c7d34dffe985586186e5e80240ae6d *R/plotGrandLinear.R
1029314a3ea38027bda38611473e3b8e *R/plotRangesLinkedToData.R
477c6b8fe86f0de972cf38fde0e1f2d4 *R/plotSpliceSum-method.R
46ddaf1bbbd586ae8de26e8a6f38a87c *R/rescale-method.R
13649525072a9c2392dd777968a89cf9 *R/scales.R
b69c4319f02d7f37803d3109df1b6f51 *R/stat_aggregate-method.R
14c62b7891680f41722e916fc3b50f62 *R/stat_bin-method.R
a7dfef6321a1d6fbe56b172350e234bd *R/stat_coverage-method.R
917b1ecee3a4ec277be43fba42a0d3de *R/stat_gene-method.R
3095c8c7f2edb4fa336bd9fee36c5d74 *R/stat_identity-method.R
0258c2daa6624f42e8f4b8f3903f6c2e *R/stat_mismatch-method.R
5be39f2a43ddb629d12d34b4bebfd4d8 *R/stat_reduce-method.R
7ff890335cadca9af8d1e0cca83e19fa *R/stat_slice-method.R
a08b0377761e1b1e1656eba38993ce6a *R/stat_stepping-method.R
808b1683ed18b106e0774fa15d711f9c *R/stat_table-method.R
4efd7ded1af10e998c812f055998452d *R/theme.R
3c93e25a9d39b728c7d5bc8602f72171 *R/utils.R
73174526c93ec3c938759ccefcaa6299 *R/zzz.R
287b1d907c7ad8baef3a8b8d28a8a789 *README.md
185e9719b91abc1aa49aee27dc121552 *TODO.org
cb5fbc71699500be132b7b91611ad7ab *build/vignette.rds
371a1268d52cc4be70553b8381cf3d6a *inst/CITATION
ff565d5043081b034d70727600e7f0a7 *inst/doc/ggbio.Rnw
e397396624d6cceb9a99b9aafca775a0 *inst/doc/ggbio.pdf
e4e3a574ed94a9c9e51a2349d30b26c2 *inst/example/GGbio-class.R
684c7b024d8b49c5dfd828032c21be8f *man/Grob-class.Rd
8719cac20e8e46205a58dc8c806909e0 *man/Plot-class.Rd
a50d883bbdecd3c2b1f3f3f1657b07d8 *man/Tracked-class.Rd
1714eed728b302b5913f94621e2a913c *man/arrangeGrobByParsingLegend.Rd
b71a73e6d20992631a11b48fcd7ca6db *man/autoplot-method.Rd
d892bec40cb5e2508f230ce2c4dfb401 *man/geom_alignment-method.Rd
92dc456cee74a16d2037c50632210ee2 *man/geom_arch-method.Rd
895bb147002a825b5a2eaf9f586d07d3 *man/geom_arrow-method.Rd
9317288809145ee5f92ca96b4220ede0 *man/geom_arrowrect-method.Rd
cde7c554daaf044e5c936c365dab9a2d *man/geom_bar-method.Rd
7751809d1671e3a506fbbe5489fe899f *man/geom_chevron-method.Rd
cf5e28d9fffa0dcdca1943026836fa83 *man/geom_rect-method.Rd
de2cf23777911e794e507d6d13e4c945 *man/geom_segment-method.Rd
c4b52e432ef75411ad550c969b0c9313 *man/ggbio-class.Rd
a833aa317bdf1bd60565b7ea412f534c *man/ggplot-method.Rd
e35ffd9ea0d3190b5f323142e391fa58 *man/ggsave.Rd
bb00ecb381b73ab6228d7dea0f4020a0 *man/layout_circle-method.Rd
0a890a953428f74ee38cef4bf9a55f08 *man/layout_karyogram-method.Rd
7d9e2e5969b34003b8700d7488500543 *man/nav.Rd
efa9d8c73dbb13b58d0b96575629deae *man/plotFragLength.Rd
201388b6a9d9438283a115fbf51e1ec1 *man/plotGrandLinear.Rd
994dddbdf46d14aad34e1fb4532f3e9c *man/plotRangesLinkedToData.Rd
40a91354b4faac757bb82d74b1d2ea41 *man/plotSingleChrom.Rd
8dfd6ae0e7ccb95b985b1222b0b347bd *man/plotSpliceSum.Rd
a722bfae0b50fa0f6c71bb88a193968d *man/plotStackedOverview.Rd
e48c503752199e9c9dc70248070a58fb *man/rescale-method.Rd
ba6e944297954b506e51a26d9079fa15 *man/scale_fill_fold_change.Rd
48929c3b6ef771bbc3e1de8fe52896e7 *man/scale_fill_giemsa.Rd
106ab02a858c11ece60fe789a40b7cb2 *man/scale_x_sequnit.Rd
e6142cf8107b12fe66dd66d032a28fa4 *man/stat_aggregate-method.Rd
0fe921b62ca6b560aef0f96ce6a1be1e *man/stat_bin-method.Rd
ec94024cd5247d138d43b19be0b33f5a *man/stat_coverage-method.Rd
dfa760d7baeb98b53c745e9b067863a6 *man/stat_gene-method.Rd
bd53c38dbf60ffb332f53f6249292d14 *man/stat_identity-method.Rd
75c76ec3e8f019e787cc8aac0180fd7e *man/stat_mismatch-method.Rd
444c3426ea67d95938ede95f099943c5 *man/stat_reduce-method.Rd
56b729e4fcd66488140cbd644540b252 *man/stat_slice-method.Rd
97a9351647c1a10a65dbbf64d8bf5740 *man/stat_stepping-method.Rd
23189cd6a8e932ae15706280190f4110 *man/stat_table-method.Rd
7aa41224034feb9fce703ea1b1e9394c *man/theme.Rd
c41cf54aa09c15e954ea18c722fae176 *man/tracks.Rd
59c8b0928d7a4f3e8003d86aca60316e *tests/test-all.R
f37f096953b3ff26ea11c01c1d2bcd30 *tests/testthat/test_grob.R
0734cb6f39d97b38dfc4b7540d67386c *vignettes/Makefile
ff565d5043081b034d70727600e7f0a7 *vignettes/fakevignettes/ggbio.Rnw
57255e3b44245abaed0e625133f60e28 *vignettes/figures/Manhattan-plotGrandLinear.pdf
d8a92967a6c33c85770bb72d63730f44 *vignettes/figures/autoplot_GappedAlignment.pdf
6f3012ccb4931bec2de5bd2581a5290d *vignettes/figures/cir-single.pdf
0343bbb24fa51972c328bfea5176b192 *vignettes/figures/circular-9-circle.pdf
0e11494477ea8f32fe891a89db615278 *vignettes/figures/circular-lower-link-track.pdf
fb9c2c3119d1cdf0c38d730ec11d6ed1 *vignettes/figures/coord_genome.pdf
7404dc03256f1247e332d6e51a931f54 *vignettes/figures/coord_linear.pdf
82a47d63659356e07bcc4b8b6c91b2a1 *vignettes/figures/coord_truncate_gaps.pdf
186753150b79b90aa8a8120ee7749aab *vignettes/figures/diagram.pdf
521239ab30bb22d99c294c5593f79326 *vignettes/figures/drawing.pdf
a7aeb73a4110a6b6d944d0c378671878 *vignettes/figures/facet.pdf
3805cffd5c32d1e31b2e36f19945454f *vignettes/figures/facet_gr.pdf
61b7f44e2b6a9e79c4870c9c4e21cf44 *vignettes/figures/geom_alignment.pdf
3e38cf8b80767f7d1edff283352eb70b *vignettes/figures/geom_arch.pdf
02551db881e0ec6a72311d70f5a4d2b1 *vignettes/figures/geom_arrow.pdf
14b4386daf2866f0d6cf4d22d51ca667 *vignettes/figures/geom_arrowrect.pdf
68ee7ebfaf30b6830c46925698e36bef *vignettes/figures/geom_bar.pdf
4bd2cd53195cdd06e4562119157b33a0 *vignettes/figures/geom_chevron.pdf
42075934c38e55fff58a5319dd116ed4 *vignettes/figures/geom_rect.pdf
8782850f2d578433451356ccd8b10412 *vignettes/figures/geom_segment.pdf
0edbdd98a1d3090523081218e9ab77d9 *vignettes/figures/geoms.pdf
964594c09214ce4ae35b7beb5582efae *vignettes/figures/grl.pdf
09dc8f31c61dbab1861bca6fa7207ff2 *vignettes/figures/icon.pdf
b139ad88fa8faff111e6cc831f99c70c *vignettes/figures/karyogram.pdf
b80071fe6016206d96455c2ff6da8aaf *vignettes/figures/layout_circle.pdf
db15d10067a55096e419b2b201a9d55e *vignettes/figures/layout_default.pdf
ed73b4be45c554ce72d514c6e98c442c *vignettes/figures/layout_karyogram.pdf
2d20bb91e3c3b0d2a4cf531d97b7e41e *vignettes/figures/man.pdf
07ae2faa322af33bf4225e2e0a7074bd *vignettes/figures/rangeslinkedtodata-link4.pdf
97197aaaba1ee20286f1fc250787282b *vignettes/figures/splice.pdf
865693c309f8a64de4536094aa90ae18 *vignettes/figures/ssx3.pdf
a133b33753dde38de78bb634479a35fb *vignettes/figures/stat_aggregate.pdf
de2eb2d97170714b4fd9ca009ea4fda6 *vignettes/figures/stat_coverage.pdf
8644a73df27ea4fe8a80b2ae4e3dfb81 *vignettes/figures/stat_coverage_icon.pdf
070ce1324741f80b361a78c72e6d43ee *vignettes/figures/stat_gene.pdf
93ec7571437baba7e8c69dcb8cbebdfd *vignettes/figures/stat_identity.pdf
b700795f611a0ed0390ed7ce0dde1310 *vignettes/figures/stat_mismatch.pdf
c721572366e66ad149df3edef63460bb *vignettes/figures/stat_reduce.pdf
91944639cdf000425dfc18551b31753d *vignettes/figures/stat_stepping.pdf
6b15fe636bfbe8b3df7be0ee1c43641f *vignettes/figures/stat_table.pdf
388f8f93472fb0c85257d16005a05ddd *vignettes/figures/track_layout.pdf
d51c5b5dcd847b90a10bede62b27cc1d *vignettes/figures/truncate_gaps.pdf
e1cc64dc2fe2aa8ed2f7968474ab2e86 *vignettes/figures/ucsc.png
0601f09cb0119489c21f7abb172b9df9 *vignettes/figures/vcf.pdf
ff565d5043081b034d70727600e7f0a7 *vignettes/ggbio.Rnw
49897225230e9c08437bc92cf73ab4fb *vignettes/knit.sh
7074306d81d6a3f40a1f50db1ae4d75d *vignettes/realvignettes/ggbio.Rnw
