43697d25ec2dbb3f0250cd553ba6b43a *DESCRIPTION
2b4fff2d6254e95b498f059c8cfa4f77 *NAMESPACE
5b7d837b9a7666c365fd08cef53b3098 *NEWS
08c00da919b0956c4edfee5c7b28c57b *R/Ops.R
add2ab7405285eaebf54aa27855b9600 *R/RcppExports.R
36a1b884277a3e70f8594bae4744edff *R/combineScoreMatrixList.R
3b1ec83cb832c3a9a29b057b8f05c7c3 *R/deprecated_defunct.R
52664fb60279fa4892d843a2134a4648 *R/documentData.R
6427f56646a7cf70b049d40b82d74759 *R/enrichmentMatrix.R
f8de33fa426ab9851a1fcbe67354130e *R/findFeatureComb.R
bfbc43b6ba92883ca6d7fb8c695a6d3d *R/genomation-classes.R
c39090688375319c3683935270eef494 *R/getRandomEnrichment.R
fac6f6ab3e3c83f4a28075c53c7d2773 *R/patternMatrix.R
11961e937bf0a98e33e16a82c55c7181 *R/plotMatrix.R
00e6c0a27eac0f31547f22ada003fd62 *R/randomizeFeature.R
1b981fef566e74dc577f2d7d631464a9 *R/readAnnotate.R
c32495b413c07f26b0d124df6cac74ca *R/readData.R
8c4d9a4e0ca50943d3136ea09fe0f274 *R/scoreMatrix.R
9ddad00a6e227d3c1c55bd63da56e1f3 *R/scoreMatrixBin.R
a808e70bb527a1d511bffc6d5409106e *R/scoreMatrixList.R
507864902281997ce304933d1f3cff37 *R/test_genomation_package.R
ec9225c59927e33187ca33df9a628ac9 *README.md
71286bf7d8e906a0602576cc3f369723 *build/vignette.rds
e0ff6291c5769d9c4d86e52e6d1dc0b0 *data/cage.RData
d1ae7cac4f57369f4f85c94aacd50a3c *data/cpgi.RData
5ee30a1c0116593f9677ba236ea7874e *data/genes.RData
84076f16d5d08959726751131ba84685 *data/promoters.RData
ac7917bb83f8587e9e9152528081b35c *inst/CITATION
5fcdf15874a2599689e27865ce080fee *inst/doc/GenomationManual.R
67130cbdb71c1d3d03e8d21094aabbae *inst/doc/GenomationManual.Rmd
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044ab8aa1742e2b04e7909f521ab0b64 *inst/extdata/Fantom4.Cage.Test
dd178f67905af90e4561236a466a46bc *inst/extdata/chr21.CpGi.hg19.bed
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31229ac2ef7e50727b46496fcc7b1fb5 *inst/extdata/tab1.bed
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9f99e5505d20509c521f36c3438fe067 *inst/unitTests/test.bedGraph
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bd8f39997e6488a27c2c552b1fd4fe4b *inst/unitTests/test.gtf
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76ef8b3e1c3dde05747d8eafdb2ccd7b *inst/unitTests/test_ScoreMatrix.R
8c839995a0d18fe502e1fd36c983e321 *inst/unitTests/test_ScoreMatrixBin.R
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6c33c932a3b50d66563ae33d84f805b1 *man/binMatrix-methods.Rd
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4f5c65ff6183c5efe602edb0af72ff8e *man/binMean.Rd
dd9433b7f7d90817bed095bb5cc2aa7b *man/binMedian.Rd
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22f4fa878e842379314ef885549f1420 *man/c.ScoreMatrixList.Rd
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1135759f5c8a2e4b31711d2929ae07f6 *man/calculateOverlapSignificance-methods.Rd
572adb2c262f3d5cb0ba94a368cb21f1 *man/checkBedValidity.Rd
1c56692d8605ba6050cf57a1e50f0465 *man/checkClass.Rd
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3e932ba90750a50a5427509b5540717f *man/constrainRanges.Rd
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2abd7a8ddb1f4017c864fa40744f9256 *man/distance2NearestFeature.Rd
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890911a6f313a5d77a1d145d133f4b10 *man/galpTo2Ranges.Rd
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202f43c8134285fac8421e3a754a1fc0 *man/gffToGRanges.Rd
00b5f365f55650b741e0f302fc50f14c *man/heatMatrix.Rd
498052c949edd96f3464338da8d90c1c *man/heatMeta.Rd
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e5ef60fdebf7e37b7d81dd977dd4b203 *man/plotTargetAnnotation-methods.Rd
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228fd78731653c6c6e1a12f966dae92d *man/randomizeFeature-methods.Rd
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53578c9ac09f832a5e039a80902b2848 *src/binSum.cpp
88e91143d371138ef4e30baa65adb9a0 *tests/genomation_unit_tests.R
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73b8c658ba69358101ea3ce56516f3d1 *vignettes/Figures/genomationFlowChart1.png
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