Package: VariantExperiment
Title: A RangedSummarizedExperiment Container for VCF/GDS Data with GDS
        Backend
Version: 1.24.0
Authors@R: c(
    person(
        "Qian", "Liu", email = "Qian.Liu@roswellpark.org", role=c("aut", "cre")
    ),
    person("Hervé",  "Pagès", role = "aut"),
    person("Martin", "Morgan", role = "aut"))
Description: VariantExperiment is a Bioconductor package for saving
    data in VCF/GDS format into RangedSummarizedExperiment object. The
    high-throughput genetic/genomic data are saved in GDSArray
    objects. The annotation data for features/samples are saved in
    DelayedDataFrame format with mono-dimensional GDSArray in each
    column. The on-disk representation of both assay data and
    annotation data achieves on-disk reading and processing and saves
    memory space significantly. The interface of
    RangedSummarizedExperiment data format enables easy and common
    manipulations for high-throughput genetic/genomic data with common
    SummarizedExperiment metaphor in R and Bioconductor.
biocViews: Infrastructure, DataRepresentation, Sequencing, Annotation,
        GenomeAnnotation, GenotypingArray
Depends: R (>= 3.6.0), S4Vectors (>= 0.21.24), SummarizedExperiment (>=
        1.13.0), GenomicRanges,
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Bioconductor/VariantExperiment
BugReports: https://github.com/Bioconductor/VariantExperiment/issues
Imports: GDSArray (>= 1.11.1), DelayedDataFrame (>= 1.6.0), tools,
        utils, stats, methods, gdsfmt, SNPRelate, SeqArray,
        DelayedArray, Biostrings, IRanges
RoxygenNote: 7.3.1
Suggests: testthat, knitr, rmarkdown, markdown, BiocStyle
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/VariantExperiment
git_branch: RELEASE_3_22
git_last_commit: 4846558
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 07:06:35 UTC; biocbuild
Author: Qian Liu [aut, cre],
  Hervé Pagès [aut],
  Martin Morgan [aut]
Maintainer: Qian Liu <Qian.Liu@roswellpark.org>
