910414b74a1186fe1bedbc02dd953663 *DESCRIPTION
99e2b5b1e9bd005c1e9305a06d3da7f6 *NAMESPACE
ec8512ea23c5ab1ec9fb23138b145bb2 *R/alignRTbyHydro.R
c05e0365499f72c3f742a25532cd1871 *R/applyttest.R
da4f4426c26a8fe2a30b31f8980fb45b *R/applyttestPep.R
5cc5fbf5e115fb1c761f05db54cedb36 *R/buildSpectraLibPair.R
47bbbc22d24fde3ba45ab4184f89965a *R/canonicalFormat.R
159dc7a94ad16c0baaf6ed6a72de2520 *R/checkQuality.R
490806a6b9f12ec9f42373915f4166ed *R/cleanLib.R
e59f1981f7f0095de332aca912d0e9f7 *R/computeRIICor.R
c7a6c477b3905170f09d03a39b630018 *R/computeRTCor.R
d8c6ab1a3c16a075601473bcc8a1d53e *R/consolidateAccession.R
4d9f8ca7ef084b8211dbd697051929d7 *R/convertAACount.R
24532f131f2c9c1b6f4881c685e3d41a *R/fdrFunctions.R
5021d3196518f9753586d4bbc18f3aea *R/getRTrain.R
79ea7f34eabc7f43aa32eab213dfc4e7 *R/isMissCleavaged.R
d45cbd958b971fbcd5c395831e187955 *R/libraryFormat.R
754db11ba16543f8df4b259f0afd29a7 *R/medianNorm.R
20133a38776d702bafa9e177335a6392 *R/mlr.R
aec73554e527110758d0b5d91ce088e6 *R/mlrGroup.R
5c1a725e8f32d2c93e00891c322c1714 *R/mlrrep.R
6c391c513db9d334a773a0e9c9473b66 *R/normalise.R
74ab878388270312ed3a63f85887b795 *R/openSwathFormat.R
5dd6c44902932bc7dc53da3e5d150cb8 *R/outputLib.R
7791c3bc75e39b93c489d11b8ee2de50 *R/parseAccession.R
1fcd631f903a8ddffa84e0c5b99d5fca *R/plotAll.R
6966743f2d237b82c9b7c025faf5528f *R/plotDensities.R
6c6bf992f322654a9469511ac82af6e8 *R/plotErrorBarsLines.R
6db6db96aa4a4b9ee8335e6dc449c10d *R/plotRIICor.R
dee20393045b4360f9e73973f469913e *R/plotRTCor.R
b18bcd3be87b4ac24b73028ebcd1db25 *R/plotRTResd.R
1d726f9df3a1750d49e6c67bb6605973 *R/plotRelativeDensities.R
caa4074c9647a24b55f6c9f1c36728c7 *R/plotStats.R
0593ed51fb2d3f2f88b19750c78a044c *R/predictRT.R
676ea22519b3a447aca315b419f5e96d *R/proteinOverlap.R
c374accae2da6b3bd4965756c15a8f73 *R/readLibFile.R
7e70b4a5bc425a66b74fc60aa88e788a *R/reliabilityCheckLibray.R
3261f640d8c695ef3b4f616ea077330b *R/reliabilityCheckSwath.R
1ebcb97b9a74bc2a99054b373ba91cbe *R/selectModel.R
588a1b3a107dca16019e2d55e4924e9f *R/splitData.R
e2ad1be28ecb452c723aaf9d70ff4646 *R/splitLib.R
5c53fff98c2b42e349a9db565ea9e835 *build/vignette.rds
3c54d6b376b7111ebb3cdbb6f5ab5706 *data/ionCorGS.rda
34ff58c7de59dbe18e9b15f2ce9b36f3 *inst/doc/SwathXtend_vignette.R
0d64ccb620dee41606ac8e6e9054c61c *inst/doc/SwathXtend_vignette.Rnw
d7b79ff7d95b9f00e73b5d562ba5d2c2 *inst/doc/SwathXtend_vignette.pdf
c90bb4eac6ce96c35e33e7c720480b78 *inst/files/Lib1.txt
29f258b8fb827e5953cda44ffb1e9472 *inst/files/Lib2.txt
7ed3da53046708c40f55b03bab242987 *inst/files/Lib2_3.txt
b2701f63a9c4428e231d99ee11238aa8 *inst/files/Lib3.txt
eb590b2c567b2fe350e073ddd96e29a9 *inst/files/Swath_result_Lib2.xlsx
fac864f2175030ca31ec0e4627dd6cd3 *inst/files/Swath_result_Lib2_3.xlsx
b73ad815a0e627748e7c86ad6bab8ced *inst/files/Swath_result_ext.xlsx
f6cffcbe2ab44e0309bcaba5b7e7ea17 *inst/files/Swath_result_seed.xlsx
dbe451953d8e9567876be042302f5967 *inst/files/hydroIndex.txt
0cd06dc1d6c5ab3a63bc7b2e2ab42798 *man/applyttest.Rd
5f3c69bb6df2ac020b27c56c0b442eb4 *man/applyttestPep.Rd
92467ec787b30894b28510e8b056832d *man/buildSpectraLibPair.Rd
d23763692b0804ee8b521f4bf8e0214e *man/canonicalFormat.Rd
3d988a98f14f531a0d76b528dd3d12ed *man/checkQuality.Rd
8acdfce43e48468c4c40b87b30b61f53 *man/cleanLib.Rd
35e57104148afc783c61b1986fe43c78 *man/coverage.Rd
904a8336167db7506be59a1ff8699156 *man/cv.Rd
93d556f3e05c85ab26a4d9a3170d6fc6 *man/fdr.crit.Rd
8c7fbc202937a072e46429fa235ec641 *man/getFdrBins.Rd
bd8a42dc011ce42b9b9033bf897e9922 *man/ionCorGS.Rd
5b586b37522b8cd7224a0b1cb19e7a86 *man/medianNorm.Rd
2c6b54ae52fdb442fa4c2a848b765482 *man/mlr.Rd
d17ab834a9a3a2843a961e9d4c3ee3f4 *man/mlrGroup.Rd
163485e637a940fcc66b7567d8952122 *man/mlrrep.Rd
610feb99c026f78a8550540ba1b9980e *man/outputLib.Rd
c2dd3ef9bff2efceaec2c3c9f9b4620f *man/plotAll.Rd
1aedb670b5be75f0cdb970167870b33d *man/plotDensities.Rd
8de7edb1ea4403eed20b255671f0086e *man/plotErrorBarsLines.Rd
677f4db2d2e168d9237489cd5c7f31f1 *man/plotRIICor.Rd
a2bb4a97cf125d66a6c0fce1ac94d855 *man/plotRTCor.Rd
ac87a9f46320106dec6dbcbdb5fec81d *man/plotRTResd.Rd
ba168db52ea68a8e8d257e779be623c5 *man/plotRelativeDensities.Rd
78270fa22f373844a66acb5a909e78ed *man/quantification.accuracy.Rd
89729c80bb802391024832a0949a9da5 *man/readLibFile.Rd
1bb396f4ea8f24781ad0c48f2472ec89 *man/reliabilityCheckLibrary.Rd
604d710673179f7ead69d08525e053d1 *man/reliabilityCheckSwath.Rd
ec1d94c6881f04a4163d20920d132058 *man/swath.means.Rd
0d64ccb620dee41606ac8e6e9054c61c *vignettes/SwathXtend_vignette.Rnw
