30bf873f4089d4dda75ef0d8b3dfb700 *DESCRIPTION
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
bc49042d339715b9587f807aad3bf3e6 *NAMESPACE
fae657b55c66d8bd2676473902b0872d *NEWS
b35319275291c28db5107499e66f74fb *R/access_sfaira.R
62a06cd4d331528f9770ba2170d450ca *R/basilisk.R
fcc0b60649bf28084a114921364e1957 *R/census.R
16f894a4728c8a0479c8f6c74dc31574 *R/dataset.R
2dd270da129a3a5b8b740bcaf6c852a6 *R/setup.R
88e1b3a58b329f90072f5a03d3bac25d *R/simulator.R
2ed89c61acf9cb460c6e546ec9f3c0c9 *README.md
0e55e22d78eef59c9f0f379c0964be6d *build/vignette.rds
3df907b50c4f00bc26ee6d988e0c849f *codecov.yml
357dd961172bf0191dac7d051404333f *configure
3ac2a0c78b45a3a0204268ad4ef4796a *configure.win
e30ffd9435007df4d1aa68035a1b2ff8 *inst/doc/SimBu.R
3d75af51dae96ddb458001d45f060cc6 *inst/doc/SimBu.Rmd
e9c21e67c65dc695523d2761c38b4397 *inst/doc/SimBu.html
6e97bcf829823a2ef5afdc02d24debf4 *inst/doc/sfaira_vignette.R
48b15a04e557df212484bc17c3e523b1 *inst/doc/sfaira_vignette.Rmd
045b311ff78a4a3ec0c3debb288b4465 *inst/doc/sfaira_vignette.html
71308f0d2b5a60ca3027a11fed5d1ffb *inst/doc/simulator_input_output.R
cafece47cbfe3f500ec27efbb83a16e3 *inst/doc/simulator_input_output.Rmd
9429d86e106270f72373820d04a45306 *inst/doc/simulator_input_output.html
968b1c7ceb24d5161cb7bb69edfc94d4 *inst/doc/simulator_scaling_factors.R
42c527f086c3a0ff8b817fad0d24c88d *inst/doc/simulator_scaling_factors.Rmd
aaef2769eb432b1c195003bb692eb1ed *inst/doc/simulator_scaling_factors.html
9d595f33d0963fca3dabfbd1bcc6d1f0 *inst/extdata/anndata.h5ad
a36fc1bd9dcfcc4bc57cf2b0aef958f7 *inst/extdata/anndata_rev.h5ad
d597f43e0b1d27367e74fe522c28459a *inst/script/sample_data_generation.txt
ed5d5f288dd1f1496a939f4e9ff85bb8 *longtests/testthat.R
30027b829cb6c9d1cdb5642fef5ab1f2 *longtests/testthat/test_dataset.R
d61f4b0ab4188bc45f6a2365de160e86 *man/SimBu.Rd
ecf2d5ecb554c5d76f267e450ac3aa34 *man/calc_scaling_vector.Rd
c541de7dec3b0bef31e7d524cfb4f448 *man/census.Rd
0e5ee285fa5b41facc273d6c3e1ebd13 *man/census_monocle.Rd
f57a90f321aa5023a757245317b77640 *man/check_annotation.Rd
f8f6380bf0e8300e7e4c90c26601f76c *man/check_if_tpm.Rd
da26d1ca39cc670a3e5c7a7357042e4f *man/compare_matrix_with_annotation.Rd
50b480fbe4a57944cf9c55e5a0843098 *man/dataset.Rd
0defff0e75247cccb3acc44cd803533b *man/dataset_h5ad.Rd
66893e1b7a54b189c2490d7bb3987e55 *man/dataset_merge.Rd
3bb5c21cefbd0574733e8691c420995d *man/dataset_seurat.Rd
f0b12933b5656cfd227c1abee1a48f63 *man/dataset_sfaira.Rd
167d2d41f81d0d8208bb56e36853cd0b *man/dataset_sfaira_multiple.Rd
08b90165db9a9b43769979e2d11fb7ab *man/dmode.Rd
97a3156656b63a2b51ca6719db7030ee *man/download_sfaira.Rd
1fbf984256fbbdc0953ee01a063a7ae6 *man/download_sfaira_multiple.Rd
5203053c0c60d8a156bda3e0a742f684 *man/filter_matrix.Rd
6e8249d2d9fbceef5675c95dea06064e *man/generate_summarized_experiment.Rd
335bc153d7358ee215bf3c61edcb127c *man/h5ad_to_adata.Rd
a86f68b54cf52bd41151cb4e981e11e5 *man/merge_scaling_factor.Rd
9f46d0624fab73f19cfc662f4acc7c59 *man/merge_simulations.Rd
3f3a14c53158b8cbf4189e0b1581f9b3 *man/plot_simulation.Rd
ee40a67f8fd17ccd925fe10cf3b3d6d5 *man/save_simulation.Rd
bbb83000c7b675769026a5ed28afdabd *man/setup_sfaira.Rd
1f5061a9af781db8025f928fea32e93a *man/sfaira_overview.Rd
4304ebb9c93402968d8b03072381a8cf *man/simulate_bulk.Rd
a8ffe38201e5d382fa88e9e79ecf6ea8 *man/simulate_sample.Rd
ed5d5f288dd1f1496a939f4e9ff85bb8 *tests/testthat.R
8f686bee79422b7fa0ea06d973dbc664 *tests/testthat/test_dataset.R
8d1893c2cbbedbf9e025218f6d61066b *tests/testthat/test_simulator.R
3d75af51dae96ddb458001d45f060cc6 *vignettes/SimBu.Rmd
ce1c8cac10683d3bd14b71e62f8a5b9e *vignettes/references.bib
48b15a04e557df212484bc17c3e523b1 *vignettes/sfaira_vignette.Rmd
cafece47cbfe3f500ec27efbb83a16e3 *vignettes/simulator_input_output.Rmd
42c527f086c3a0ff8b817fad0d24c88d *vignettes/simulator_scaling_factors.Rmd
